SMTL ID : 3fpw.1

Crystal Structure of HbpS with bound iron

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-octamer

Ligands

16 x FE: FE (III) ION(Non-covalent)

FE.1: 7 residues within 4Å: Chain A: K.144 Chain B: K.144 Chain C: K.144 Chain D: K.144 Ligands: FE.7, FE.13, FE.19 No protein-ligand interaction detected (PLIP) FE.2: 1 residues within 4Å: Chain D: R.86 No protein-ligand interaction detected (PLIP) FE.7: 7 residues within 4Å: Chain A: K.144 Chain B: K.144 Chain C: K.144 Chain D: K.144 Ligands: FE.1, FE.13, FE.19 No protein-ligand interaction detected (PLIP) FE.8: 1 residues within 4Å: Chain C: R.86 No protein-ligand interaction detected (PLIP) FE.13: 7 residues within 4Å: Chain A: K.144 Chain B: K.144 Chain C: K.144 Chain D: K.144 Ligands: FE.1, FE.7, FE.19 No protein-ligand interaction detected (PLIP) FE.14: 1 residues within 4Å: Chain A: R.86 No protein-ligand interaction detected (PLIP) FE.19: 7 residues within 4Å: Chain A: K.144 Chain B: K.144 Chain C: K.144 Chain D: K.144 Ligands: FE.1, FE.7, FE.13 No protein-ligand interaction detected (PLIP) FE.20: 1 residues within 4Å: Chain B: R.86 No protein-ligand interaction detected (PLIP) FE.25: 7 residues within 4Å: Chain E: K.144 Chain F: K.144 Chain G: K.144 Chain H: K.144 Ligands: FE.31, FE.37, FE.43 No protein-ligand interaction detected (PLIP) FE.26: 1 residues within 4Å: Chain H: R.86 No protein-ligand interaction detected (PLIP) FE.31: 7 residues within 4Å: Chain E: K.144 Chain F: K.144 Chain G: K.144 Chain H: K.144 Ligands: FE.25, FE.37, FE.43 No protein-ligand interaction detected (PLIP) FE.32: 1 residues within 4Å: Chain G: R.86 No protein-ligand interaction detected (PLIP) FE.37: 7 residues within 4Å: Chain E: K.144 Chain F: K.144 Chain G: K.144 Chain H: K.144 Ligands: FE.25, FE.31, FE.43 No protein-ligand interaction detected (PLIP) FE.38: 1 residues within 4Å: Chain E: R.86 No protein-ligand interaction detected (PLIP) FE.43: 7 residues within 4Å: Chain E: K.144 Chain F: K.144 Chain G: K.144 Chain H: K.144 Ligands: FE.25, FE.31, FE.37 No protein-ligand interaction detected (PLIP) FE.44: 1 residues within 4Å: Chain F: R.86 No protein-ligand interaction detected (PLIP)

32 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 10 residues within 4Å: Chain A: Q.111, S.115, K.119, L.152, A.171, G.172, A.173, D.179 Chain C: W.126, I.146 Ligand excluded by PLIP PO4.4: 3 residues within 4Å: Chain A: E.114, E.117, R.118 Ligand excluded by PLIP PO4.5: 5 residues within 4Å: Chain A: D.106, G.107 Chain C: T.60, S.62 Chain F: H.64 Ligand excluded by PLIP PO4.6: 3 residues within 4Å: Chain A: R.118, P.147, G.148 Ligand excluded by PLIP PO4.9: 10 residues within 4Å: Chain B: Q.111, S.115, K.119, L.152, A.171, G.172, A.173, D.179 Chain D: W.126, I.146 Ligand excluded by PLIP PO4.10: 3 residues within 4Å: Chain B: E.114, E.117, R.118 Ligand excluded by PLIP PO4.11: 5 residues within 4Å: Chain B: D.106, G.107 Chain D: T.60, S.62 Chain E: H.64 Ligand excluded by PLIP PO4.12: 3 residues within 4Å: Chain B: R.118, P.147, G.148 Ligand excluded by PLIP PO4.15: 10 residues within 4Å: Chain B: W.126, I.146 Chain C: Q.111, S.115, K.119, L.152, A.171, G.172, A.173, D.179 Ligand excluded by PLIP PO4.16: 3 residues within 4Å: Chain C: E.114, E.117, R.118 Ligand excluded by PLIP PO4.17: 5 residues within 4Å: Chain B: T.60, S.62 Chain C: D.106, G.107 Chain G: H.64 Ligand excluded by PLIP PO4.18: 3 residues within 4Å: Chain C: R.118, P.147, G.148 Ligand excluded by PLIP PO4.21: 10 residues within 4Å: Chain A: W.126, I.146 Chain D: Q.111, S.115, K.119, L.152, A.171, G.172, A.173, D.179 Ligand excluded by PLIP PO4.22: 3 residues within 4Å: Chain D: E.114, E.117, R.118 Ligand excluded by PLIP PO4.23: 5 residues within 4Å: Chain A: T.60, S.62 Chain D: D.106, G.107 Chain H: H.64 Ligand excluded by PLIP PO4.24: 3 residues within 4Å: Chain D: R.118, P.147, G.148 Ligand excluded by PLIP PO4.27: 10 residues within 4Å: Chain E: Q.111, S.115, K.119, L.152, A.171, G.172, A.173, D.179 Chain G: W.126, I.146 Ligand excluded by PLIP PO4.28: 3 residues within 4Å: Chain E: E.114, E.117, R.118 Ligand excluded by PLIP PO4.29: 5 residues within 4Å: Chain B: H.64 Chain E: D.106, G.107 Chain G: T.60, S.62 Ligand excluded by PLIP PO4.30: 3 residues within 4Å: Chain E: R.118, P.147, G.148 Ligand excluded by PLIP PO4.33: 10 residues within 4Å: Chain F: Q.111, S.115, K.119, L.152, A.171, G.172, A.173, D.179 Chain H: W.126, I.146 Ligand excluded by PLIP PO4.34: 3 residues within 4Å: Chain F: E.114, E.117, R.118 Ligand excluded by PLIP PO4.35: 5 residues within 4Å: Chain A: H.64 Chain F: D.106, G.107 Chain H: T.60, S.62 Ligand excluded by PLIP PO4.36: 3 residues within 4Å: Chain F: R.118, P.147, G.148 Ligand excluded by PLIP PO4.39: 10 residues within 4Å: Chain F: W.126, I.146 Chain G: Q.111, S.115, K.119, L.152, A.171, G.172, A.173, D.179 Ligand excluded by PLIP PO4.40: 3 residues within 4Å: Chain G: E.114, E.117, R.118 Ligand excluded by PLIP PO4.41: 5 residues within 4Å: Chain C: H.64 Chain F: T.60, S.62 Chain G: D.106, G.107 Ligand excluded by PLIP PO4.42: 3 residues within 4Å: Chain G: R.118, P.147, G.148 Ligand excluded by PLIP PO4.45: 10 residues within 4Å: Chain E: W.126, I.146 Chain H: Q.111, S.115, K.119, L.152, A.171, G.172, A.173, D.179 Ligand excluded by PLIP PO4.46: 3 residues within 4Å: Chain H: E.114, E.117, R.118 Ligand excluded by PLIP PO4.47: 5 residues within 4Å: Chain D: H.64 Chain E: T.60, S.62 Chain H: D.106, G.107 Ligand excluded by PLIP PO4.48: 3 residues within 4Å: Chain H: R.118, P.147, G.148 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ortiz de Orue Lucana, D. et al., The oligomeric assembly of the novel haem-degrading protein HbpS is essential for interaction with its cognate two-component sensor kinase. J.Mol.Biol. (2009)

Release Date

2009-01-20

Peptides

Extracellular haem-binding protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Extracellular haem-binding protein

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