SMTL ID : 3fpx.1

Native fungus laccase from Trametes hirsuta

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-MAN-MAN-MAN.1: 13 residues within 4Å: Chain A: A.14, F.20, S.21, R.22, Q.23, N.54, T.56, M.57, H.153, T.154, A.155, L.158 Ligands: PO4.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.22 Hydrogen bonds: A:A.155

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-MAN.2: 5 residues within 4Å: Chain A: G.215, N.217, Q.252, V.297, K.298 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.297

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 4 residues within 4Å: Chain A: N.327, S.383, P.385, N.436 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.327 Hydrogen bonds: A:N.327

4 x CU: COPPER (II) ION(Non-covalent)

CU.4: 5 residues within 4Å: Chain A: H.111, H.398, H.400, H.452 Ligands: CU.5 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.111, A:H.400, A:H.452, H2O.2, H2O.2 CU.5: 7 residues within 4Å: Chain A: H.64, H.66, H.109, H.398, H.454 Ligands: CU.4, CU.6 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.66, A:H.109, A:H.454, H2O.2, H2O.2 CU.6: 6 residues within 4Å: Chain A: H.64, H.66, G.67, H.398, H.400 Ligands: CU.5 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.64, A:H.398, H2O.2, H2O.2 CU.7: 5 residues within 4Å: Chain A: H.395, C.453, I.455, H.458, F.463 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.395, A:C.453, A:H.458

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 4 residues within 4Å: Chain A: N.333, S.335, N.336, F.338 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.335

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.9: 5 residues within 4Å: Chain A: T.53, N.54, H.55, T.56 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.55, A:T.56, A:T.56, A:T.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Polyakov, K.M. et al., Structure of native laccase from Coriolus hirsutus at 1.8 A resolution. To be Published

Release Date

2009-01-27

Peptides

Laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Laccase

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