SMTL ID : 3fpz.1

Saccharomyces cerevisiae THI4p is a suicide thiamin thiazole synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-octamer

Ligands

8 x AHZ: ADENOSINE DIPHOSPHATE 5-(BETA-ETHYL)-4-METHYL-THIAZOLE-2-CARBOXYLIC ACID(Non-covalent)

AHZ.1: 30 residues within 4Å: Chain A: V.71, G.72, G.74, S.75, S.76, I.96, E.97, S.98, S.99, G.104, G.105, T.168, C.169, V.170, T.234, T.235, G.236, H.237, F.241, G.242, F.244, G.290, M.291, R.301, M.302, G.303, T.305, M.309 Chain E: D.207, P.208 26 PLIP interactions: 25 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:S.75, A:S.76, A:S.76, A:S.76, A:S.98, A:S.99, A:G.104, A:G.105, A:V.170, A:V.170, A:G.236, A:G.242, A:M.291, A:M.302, A:G.303 Water bridges: A:G.74, A:G.77, A:S.99, A:S.99, A:S.99, A:S.99, A:H.237, A:E.292, E:C.204 Salt bridges: A:H.237, A:R.301 AHZ.4: 29 residues within 4Å: Chain B: V.71, G.72, G.74, S.75, S.76, I.96, E.97, S.98, S.99, G.104, G.105, T.168, C.169, V.170, T.234, T.235, G.236, H.237, F.241, F.244, G.290, M.291, R.301, M.302, G.303, T.305, M.309 Chain H: D.207, P.208 25 PLIP interactions: 24 interactions with chain B, 1 interactions with chain H Hydrogen bonds: B:S.75, B:S.76, B:S.76, B:S.76, B:S.98, B:S.99, B:G.104, B:G.105, B:V.170, B:V.170, B:G.236, B:M.291, B:M.302, B:G.303 Water bridges: B:G.74, B:G.77, B:E.97, B:E.97, B:S.99, B:S.99, B:H.237, B:E.292, H:C.204 Salt bridges: B:H.237, B:R.301 AHZ.6: 30 residues within 4Å: Chain C: V.71, G.72, G.74, S.75, S.76, I.96, E.97, S.98, S.99, G.104, G.105, T.168, C.169, V.170, T.234, T.235, G.236, H.237, F.241, G.242, F.244, G.290, M.291, R.301, M.302, G.303, T.305, M.309 Chain G: D.207, P.208 26 PLIP interactions: 25 interactions with chain C, 1 interactions with chain G Hydrogen bonds: C:S.75, C:S.76, C:S.76, C:S.76, C:S.98, C:S.99, C:G.104, C:G.105, C:V.170, C:V.170, C:G.236, C:G.242, C:M.291, C:M.302, C:G.303 Water bridges: C:G.74, C:G.77, C:S.99, C:S.99, C:S.99, C:S.99, C:H.237, C:E.292, G:C.204 Salt bridges: C:H.237, C:R.301 AHZ.9: 29 residues within 4Å: Chain D: V.71, G.72, G.74, S.75, S.76, I.96, E.97, S.98, S.99, G.104, G.105, T.168, C.169, V.170, T.234, T.235, G.236, H.237, F.241, F.244, G.290, M.291, R.301, M.302, G.303, T.305, M.309 Chain F: D.207, P.208 25 PLIP interactions: 24 interactions with chain D, 1 interactions with chain F Hydrogen bonds: D:S.75, D:S.76, D:S.76, D:S.76, D:S.98, D:S.99, D:G.104, D:G.105, D:V.170, D:V.170, D:G.236, D:M.291, D:M.302, D:G.303 Water bridges: D:G.74, D:G.77, D:E.97, D:E.97, D:S.99, D:S.99, D:H.237, D:E.292, F:C.204 Salt bridges: D:H.237, D:R.301 AHZ.11: 30 residues within 4Å: Chain C: D.207, P.208 Chain E: V.71, G.72, G.74, S.75, S.76, I.96, E.97, S.98, S.99, G.104, G.105, T.168, C.169, V.170, T.234, T.235, G.236, H.237, F.241, G.242, F.244, G.290, M.291, R.301, M.302, G.303, T.305, M.309 26 PLIP interactions: 25 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:S.75, E:S.76, E:S.76, E:S.76, E:S.98, E:S.99, E:G.104, E:G.105, E:V.170, E:V.170, E:G.236, E:G.242, E:M.291, E:M.302, E:G.303 Water bridges: E:G.74, E:G.77, E:S.99, E:S.99, E:S.99, E:S.99, E:H.237, E:E.292, C:C.204 Salt bridges: E:H.237, E:R.301 AHZ.14: 29 residues within 4Å: Chain B: D.207, P.208 Chain F: V.71, G.72, G.74, S.75, S.76, I.96, E.97, S.98, S.99, G.104, G.105, T.168, C.169, V.170, T.234, T.235, G.236, H.237, F.241, F.244, G.290, M.291, R.301, M.302, G.303, T.305, M.309 25 PLIP interactions: 23 interactions with chain F, 2 interactions with chain B Hydrogen bonds: F:S.75, F:S.76, F:S.76, F:S.76, F:S.98, F:S.99, F:G.104, F:G.105, F:V.170, F:V.170, F:G.236, F:M.291, F:M.302, F:G.303 Water bridges: F:G.74, F:G.77, F:E.97, F:E.97, F:S.99, F:H.237, F:E.292, B:C.204, B:C.204 Salt bridges: F:H.237, F:R.301 AHZ.16: 30 residues within 4Å: Chain A: D.207, P.208 Chain G: V.71, G.72, G.74, S.75, S.76, I.96, E.97, S.98, S.99, G.104, G.105, T.168, C.169, V.170, T.234, T.235, G.236, H.237, F.241, G.242, F.244, G.290, M.291, R.301, M.302, G.303, T.305, M.309 26 PLIP interactions: 25 interactions with chain G, 1 interactions with chain A Hydrogen bonds: G:S.75, G:S.76, G:S.76, G:S.76, G:S.98, G:S.99, G:G.104, G:G.105, G:V.170, G:V.170, G:G.236, G:G.242, G:M.291, G:M.302, G:G.303 Water bridges: G:G.74, G:G.77, G:S.99, G:S.99, G:S.99, G:S.99, G:H.237, G:E.292, A:C.204 Salt bridges: G:H.237, G:R.301 AHZ.19: 29 residues within 4Å: Chain D: D.207, P.208 Chain H: V.71, G.72, G.74, S.75, S.76, I.96, E.97, S.98, S.99, G.104, G.105, T.168, C.169, V.170, T.234, T.235, G.236, H.237, F.241, F.244, G.290, M.291, R.301, M.302, G.303, T.305, M.309 25 PLIP interactions: 2 interactions with chain D, 23 interactions with chain H Water bridges: D:C.204, D:C.204, H:G.74, H:G.77, H:E.97, H:E.97, H:S.99, H:H.237, H:E.292 Hydrogen bonds: H:S.75, H:S.76, H:S.76, H:S.76, H:S.98, H:S.99, H:G.104, H:G.105, H:V.170, H:V.170, H:G.236, H:M.291, H:M.302, H:G.303 Salt bridges: H:H.237, H:R.301

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.32, E.33 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.33 SO4.3: 2 residues within 4Å: Chain A: Y.82, K.155 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.82 Water bridges: A:E.128, A:K.155 Salt bridges: A:K.86, A:K.155 SO4.5: 2 residues within 4Å: Chain B: Y.82, K.155 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.82 Salt bridges: B:K.86, B:K.155 SO4.7: 2 residues within 4Å: Chain C: K.32, E.33 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.33 SO4.8: 2 residues within 4Å: Chain C: Y.82, K.155 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Y.82 Water bridges: C:E.128, C:K.155 Salt bridges: C:K.86, C:K.155 SO4.10: 2 residues within 4Å: Chain D: Y.82, K.155 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.82 Salt bridges: D:K.86, D:K.155 SO4.12: 2 residues within 4Å: Chain E: K.32, E.33 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.33 SO4.13: 2 residues within 4Å: Chain E: Y.82, K.155 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:Y.82 Water bridges: E:E.128, E:K.155 Salt bridges: E:K.86, E:K.155 SO4.15: 2 residues within 4Å: Chain F: Y.82, K.155 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:Y.82 Salt bridges: F:K.86, F:K.155 SO4.17: 2 residues within 4Å: Chain G: K.32, E.33 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:E.33 SO4.18: 2 residues within 4Å: Chain G: Y.82, K.155 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:Y.82 Water bridges: G:E.128, G:K.155 Salt bridges: G:K.86, G:K.155 SO4.20: 2 residues within 4Å: Chain H: Y.82, K.155 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:Y.82 Salt bridges: H:K.86, H:K.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chatterjee, A. et al., Saccharomyces cerevisiae THI4p is a suicide thiamine thiazole synthase. Nature (2011)

Release Date

2010-01-19

Peptides

Thiazole biosynthetic enzyme: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Thiazole biosynthetic enzyme