SMTL ID : 3fql.1

Hepatitis C virus polymerase NS5B (CON1 1-570) with HCV-796 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 79Z: 5-cyclopropyl-2-(4-fluorophenyl)-6-[(2-hydroxyethyl)(methylsulfonyl)amino]-N-methyl-1-benzofuran-3-carboxamide(Non-covalent)

79Z.1: 17 residues within 4Å: Chain A: F.201, P.205, R.208, L.212, L.322, C.324, D.327, V.329, I.371, S.373, C.374, S.376, L.392, M.422, Y.423, Y.456, Y.563 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.201, A:F.201, A:L.212, A:V.329, A:Y.456, A:Y.456 Hydrogen bonds: A:R.208, A:S.373, A:S.373, A:Y.456, A:Y.563

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: E.369, N.377, S.379, T.393, S.486, G.488, E.489, R.492 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.369, A:E.369, A:N.377, A:S.379, A:S.486, A:E.489, A:E.489 GOL.3: 5 residues within 4Å: Chain A: L.465, G.523, G.524, R.525, A.526 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.525, A:R.525, A:A.526

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hang, J.Q. et al., Slow binding inhibition and mechanism of resistance of non-nucleoside polymerase inhibitors of hepatitis C virus. J.Biol.Chem. (2009)

Release Date

2009-02-24

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase