SMTL ID : 3fqq.1

Crystal structure of a novel dimeric form of HCV NS5A domain I protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.9, C.27, C.29, C.50, S.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.27, A:C.29, A:C.50 ZN.4: 4 residues within 4Å: Chain B: C.9, C.27, C.29, C.50 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:C.27, B:C.29, B:C.50

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: H.129, R.130, Y.131 Chain B: H.129, R.130, Y.131 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.130, A:R.130, A:Y.131, A:Y.131 Water bridges: B:L.128, A:T.69

1 x 0BD: 3-methyl-1-(2-methylpropyl)butyl 4-O-beta-L-gulopyranosyl-beta-D-glucopyranoside(Non-covalent)

0BD.3: 9 residues within 4Å: Chain A: K.14, G.15, V.16, W.17, N.39, G.40, S.41, M.42, G.56 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.15, A:M.42, A:M.42 Water bridges: A:G.15, A:W.17, A:I.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Love, R.A. et al., Crystal structure of a novel dimeric form of NS5A domain I protein from hepatitis C virus. J.Virol. (2009)

Release Date

2009-03-24

Peptides

Non-structural protein 5A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Non-structural protein 5A

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