SMTL ID : 3fr0.1

Human glucokinase in complex with 2-amino benzamide activator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 15 residues within 4Å: Chain A: S.141, F.142, P.143, T.158, K.159, N.194, D.195, T.196, I.215, G.219, C.220, N.221, E.246, Q.277, E.280 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.158, A:T.158, A:K.159, A:N.194, A:N.194, A:C.220, A:N.221, A:E.246, A:Q.277 Water bridges: A:C.220, A:E.246 Salt bridges: A:K.159

1 x AJB: 2-amino-N-(4-methyl-1,3-thiazol-2-yl)-5-[(4-methyl-4H-1,2,4-triazol-3-yl)sulfanyl]benzamide(Non-covalent)

AJB.2: 13 residues within 4Å: Chain A: Y.51, V.52, R.53, S.54, T.55, P.56, I.201, Y.204, Y.205, C.210, M.225, V.442, V.445 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.52, A:P.56, A:I.201, A:Y.204 Hydrogen bonds: A:R.53, A:R.53, A:T.55, A:Y.205 Water bridges: A:Y.204, A:E.211, A:R.240, A:R.240

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: M.228, V.231, V.234, E.235, G.236, D.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.237, A:D.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishimura, T. et al., Identification of novel and potent 2-amino benzamide derivatives as allosteric glucokinase activators. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-02-17

Peptides

Glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase

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