- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x COA: COENZYME A(Non-covalent)
- 3 x T3Q: [(3R,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate(Non-covalent)
T3Q.2: 19 residues within 4Å:- Chain A: R.80, G.98, H.99, K.114, G.116, T.117, H.134, S.135, F.152, F.243, R.245
- Chain C: Y.86, R.104, Q.122, N.159, D.160, P.164, S.165
- Ligands: COA.1
23 PLIP interactions:9 interactions with chain C, 14 interactions with chain A- Hydrophobic interactions: C:P.164, A:F.243
- Hydrogen bonds: C:Y.86, C:Y.86, C:N.159, C:D.160, A:T.117, A:N.132, A:S.135
- Water bridges: C:R.104, C:N.159, A:R.80, A:T.117, A:R.245
- Salt bridges: C:R.104, A:K.114, A:K.114, A:H.134, A:H.134, A:R.245, A:R.245
- pi-Cation interactions: C:R.104, A:R.80
T3Q.4: 19 residues within 4Å:- Chain A: Y.86, R.104, Q.122, N.159, D.160, P.164, S.165
- Chain B: R.80, G.98, H.99, K.114, G.116, T.117, H.134, S.135, F.152, F.243, R.245
- Ligands: COA.3
23 PLIP interactions:14 interactions with chain B, 9 interactions with chain A- Hydrophobic interactions: B:F.243, A:P.164
- Hydrogen bonds: B:T.117, B:N.132, B:S.135, A:Y.86, A:Y.86, A:N.159, A:D.160
- Water bridges: B:R.80, B:T.117, B:R.245, A:R.104, A:N.159
- Salt bridges: B:K.114, B:K.114, B:H.134, B:H.134, B:R.245, B:R.245, A:R.104
- pi-Cation interactions: B:R.80, A:R.104
T3Q.6: 19 residues within 4Å:- Chain B: Y.86, R.104, Q.122, N.159, D.160, P.164, S.165
- Chain C: R.80, G.98, H.99, K.114, G.116, T.117, H.134, S.135, F.152, F.243, R.245
- Ligands: COA.5
23 PLIP interactions:14 interactions with chain C, 9 interactions with chain B- Hydrophobic interactions: C:F.243, B:P.164
- Hydrogen bonds: C:T.117, C:N.132, C:S.135, B:Y.86, B:Y.86, B:N.159, B:D.160
- Water bridges: C:R.80, C:T.117, C:R.245, B:R.104, B:N.159
- Salt bridges: C:K.114, C:K.114, C:H.134, C:H.134, C:R.245, C:R.245, B:R.104
- pi-Cation interactions: C:R.80, B:R.104
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J. et al., Structural and Functional Studies of QdtC: an N-Acetyltransferase Required for the Biosynthesis of dTDP-3-Acetamido-3,6-Dideoxy-alpha-D-Glucose. Biochemistry (2009)
- Release Date
- 2009-02-17
- Peptides
- QdtC: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x COA: COENZYME A(Non-covalent)
- 3 x T3Q: [(3R,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J. et al., Structural and Functional Studies of QdtC: an N-Acetyltransferase Required for the Biosynthesis of dTDP-3-Acetamido-3,6-Dideoxy-alpha-D-Glucose. Biochemistry (2009)
- Release Date
- 2009-02-17
- Peptides
- QdtC: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B