SMTL ID : 3fsg.1 (3 other biounits)

Crystal structure of alpha/beta superfamily hydrolase from Oenococcus oeni PSU-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: D.143, I.144, F.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.142, A:D.143, A:I.144 EDO.2: 4 residues within 4Å: Chain A: E.182, D.183, K.184, T.185 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.182, A:K.184, A:T.185, A:T.185, A:T.185 EDO.7: 5 residues within 4Å: Chain B: D.127, Q.191, N.193, Y.194, S.195 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.194, B:S.195 EDO.13: 6 residues within 4Å: Chain C: L.140, E.142, D.143, I.144, F.153 Ligands: EDO.14 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.142, C:I.144 EDO.14: 1 residues within 4Å: Ligands: EDO.13 No protein-ligand interaction detected (PLIP) EDO.15: 5 residues within 4Å: Chain C: A.105, F.108, H.109, F.198, L.202 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: D.127, Q.191, N.192, N.193, Y.194, S.195 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.127, A:Q.191, A:Y.194, A:S.195 Water bridges: A:A.126, A:S.195 GOL.12: 6 residues within 4Å: Chain C: D.127, Q.191, N.192, N.193, Y.194, S.195 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.127, C:N.192, C:Y.194, C:S.195 Water bridges: C:S.195

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.89, R.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.90 Salt bridges: A:R.89, A:R.90 SO4.5: 9 residues within 4Å: Chain A: L.30, S.97, Y.98, V.123, H.128, R.131, Q.191, Y.194, V.221 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.97, A:Y.194 Water bridges: A:Q.191 Salt bridges: A:H.128, A:R.131 SO4.8: 7 residues within 4Å: Chain B: L.30, V.123, H.128, R.131, Q.191, Y.194, V.221 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.191, B:Y.194 Salt bridges: B:H.128, B:R.131 SO4.9: 4 residues within 4Å: Chain B: I.18, G.19, G.48, R.52 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.52 SO4.10: 2 residues within 4Å: Chain B: N.62, K.181 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.62, B:N.62 Salt bridges: B:K.181 SO4.16: 8 residues within 4Å: Chain C: L.30, S.97, Y.98, V.123, H.128, R.131, Y.194, V.221 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.97, C:Y.194 Water bridges: C:Y.98, C:Y.98 Salt bridges: C:H.128, C:R.131

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: N.192 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of alpha/beta superfamily hydrolase from Oenococcus oeni PSU-1. To be Published

Release Date

2009-01-27

Peptides

Alpha/beta superfamily hydrolase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

Alpha/beta superfamily hydrolase

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