SMTL ID : 3fsr.1

Chimera of alcohol dehydrogenase by exchange of the cofactor binding domain res 153-295 of T. brockii ADH by C. beijerinckii ADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.37, S.39, H.59, D.150 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.37, A:H.59, A:D.150 ZN.2: 6 residues within 4Å: Chain A: G.259, G.260, H.287, T.289 Chain C: Y.99 Ligands: EDO.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.259, A:G.260, A:H.287, A:T.289, H2O.1 ZN.5: 6 residues within 4Å: Chain B: G.259, G.260, I.261, H.287, T.289 Chain D: Y.99 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:G.259, B:G.260, B:H.287, B:T.289, H2O.36 ZN.7: 5 residues within 4Å: Chain C: C.37, S.39, H.59, D.150 Ligands: EDO.8 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.37, C:H.59, C:D.150 ZN.9: 5 residues within 4Å: Chain A: Y.99 Chain C: G.259, G.260, H.287, T.289 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:G.259, C:G.260, C:H.287, C:T.289, H2O.2 ZN.10: 5 residues within 4Å: Chain B: Y.99 Chain D: G.259, G.260, H.287, T.289 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:G.259, D:G.260, D:H.287, D:T.289, H2O.16

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: S.39, W.110, D.150, L.294, C.295 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.150 Water bridges: A:T.154 EDO.4: 6 residues within 4Å: Chain A: G.259, I.261, T.289 Chain C: Y.99, K.291 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.99, C:Y.99 Water bridges: C:K.291 EDO.6: 5 residues within 4Å: Chain B: H.59, W.110, D.150, Y.267, L.294 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.150 EDO.8: 5 residues within 4Å: Chain A: M.285 Chain C: H.59, D.150, Y.267 Ligands: ZN.7 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.150 Water bridges: C:T.154 EDO.11: 4 residues within 4Å: Chain D: H.59, W.110, D.150, L.294 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.150

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 3 residues within 4Å: Chain D: H.222, I.223, V.224 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goihberg, E. et al., Biochemical and structural properties of chimeras constructed by exchange of cofactor-binding domains in alcohol dehydrogenases from thermophilic and mesophilic microorganisms. Biochemistry (2010)

Release Date

2010-01-19

Peptides

NADP-dependent alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NADP-dependent alcohol dehydrogenase