SMTL ID : 3ftn.1

Q165E/S254K Double Mutant Chimera of alcohol dehydrogenase by exchange of the cofactor binding domain res 153-295 of T. brockii ADH by C. beijerinckii ADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.37, S.39, H.59, D.150 Ligands: ACT.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.37, A:H.59, A:D.150 ZN.9: 5 residues within 4Å: Chain B: C.37, S.39, H.59, D.150 Ligands: ACT.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.37, B:H.59, B:D.150 ZN.18: 5 residues within 4Å: Chain C: C.37, S.39, H.59, D.150 Ligands: ACT.20 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Ligand interactions Metal complexes: C:C.37, C:H.59, C:D.150, ACT.20 ZN.24: 4 residues within 4Å: Chain D: C.37, S.39, H.59, D.150 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.37, D:H.59, D:D.150, H2O.29

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: S.39, H.59, W.110, D.150, L.294 Chain C: M.285 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.110 Salt bridges: A:H.59 ACT.10: 7 residues within 4Å: Chain B: S.39, H.59, W.110, D.150, L.294 Chain D: M.285 Ligands: ZN.9 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.110 Salt bridges: B:H.59 ACT.19: 2 residues within 4Å: Chain C: G.271, D.272 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.272 Water bridges: C:G.271 ACT.20: 8 residues within 4Å: Chain A: M.285 Chain C: S.39, H.59, W.110, D.150, T.154, L.294 Ligands: ZN.18 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:W.110, C:L.294 Hydrogen bonds: C:S.39, C:T.154, C:T.154 Salt bridges: C:H.59

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: G.174, I.175, G.176, V.197, G.198, S.199, R.200, C.203 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.175, A:G.176, A:S.199, A:S.199, A:R.200 EDO.4: 4 residues within 4Å: Chain A: D.163, I.261, K.291 Chain C: K.291 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:D.163, A:K.291, C:K.291, C:K.291 EDO.5: 3 residues within 4Å: Chain A: P.296, R.301, R.304 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.301 Water bridges: A:R.304, B:M.166 EDO.6: 2 residues within 4Å: Chain A: F.327, D.328 2 PLIP interactions: 2 interactions with chain A Water bridges: A:F.327, A:D.328 EDO.7: 5 residues within 4Å: Chain A: R.304, D.307 Chain B: G.167, D.237, K.257 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.303, A:R.304, B:K.257 EDO.11: 4 residues within 4Å: Chain B: E.139, V.309, F.310, K.312 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.139, B:K.312, B:K.312 EDO.13: 4 residues within 4Å: Chain B: D.74, D.130, R.299 Chain C: S.93 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Water bridges: C:S.93, B:R.299, B:R.299 EDO.16: 5 residues within 4Å: Chain B: S.93, Q.96 Chain C: D.130, R.299, E.303 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.130, C:R.299, C:E.303 EDO.17: 3 residues within 4Å: Chain B: P.24, E.71 Chain C: F.25 2 PLIP interactions: 2 interactions with chain C Water bridges: C:E.71, C:E.71 EDO.22: 4 residues within 4Å: Chain C: H.157, E.160, R.301 Ligands: EDO.23 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.157 EDO.23: 7 residues within 4Å: Chain A: H.287 Chain C: G.98, Y.99, Q.101, H.157, P.296 Ligands: EDO.22 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.98, C:Q.101 Water bridges: C:H.100

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 1 residues within 4Å: Chain A: F.25 Ligand excluded by PLIP CL.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain B: D.307, F.310 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: P.24, G.69, S.70 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain C: R.325, A.352 Ligand excluded by PLIP CL.25: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goihberg, E. et al., Biochemical and structural properties of chimeras constructed by exchange of cofactor-binding domains in alcohol dehydrogenases from thermophilic and mesophilic microorganisms. Biochemistry (2010)

Release Date

2010-01-26

Peptides

NADP-dependent alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NADP-dependent alcohol dehydrogenase