SMTL ID : 3fub.1 (1 other biounit)

Crystal structure of GDNF-GFRalpha1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-2-2-mer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: L.163, S.164, F.188, K.189, D.190, N.191, K.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.188, A:N.191 EDO.3: 6 residues within 4Å: Chain A: D.21, K.24 Chain B: R.66, D.108, D.109, K.129 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.24, A:K.24, B:R.66 EDO.4: 6 residues within 4Å: Chain A: N.18, K.24 Chain B: L.63, I.64, L.111, H.126 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:I.64, B:H.126, A:N.18 EDO.5: 7 residues within 4Å: Chain C: L.163, S.164, F.188, K.189, D.190, N.191, K.195 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:F.188, C:N.191 EDO.7: 6 residues within 4Å: Chain C: D.21, K.24 Chain D: R.66, D.108, D.109, K.129 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:R.66, D:D.108, C:K.24, C:K.24 EDO.8: 6 residues within 4Å: Chain C: N.18, K.24 Chain D: L.63, I.64, L.111, H.126 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:N.18, D:I.64, D:H.126

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain B: N.49 No protein-ligand interaction detected (PLIP) NAG.6: 1 residues within 4Å: Chain D: N.49 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parkash, V. et al., Comparison of GFL-GFRalpha complexes: further evidence relating GFL bend angle to RET signalling. Acta Crystallogr.,Sect.F (2009)

Release Date

2009-06-02

Peptides

GDNF family receptor alpha-1: AC
Glial cell line-derived neurotrophic factor: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

GDNF family receptor alpha-1

Glial cell line-derived neurotrophic factor

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