SMTL ID : 3fv3.3 (7 other biounits)

Secreted aspartic protease 1 from Candida parapsilosis in complex with pepstatin A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x IVA- VAL- VAL- STA- ALA- STA: pepstatin A(Non-covalent)

IVA-VAL-VAL-STA-ALA-STA.1: 21 residues within 4Å: Chain A: P.12, I.30, D.32, G.34, S.35, Y.78, G.79, D.80, I.117, N.125, L.218, D.220, G.222, T.223, T.224, L.225, Y.227, Y.285, D.301, I.303 Ligands: GOL.4 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.30, A:Y.78, A:D.80, A:I.117, A:L.218, A:L.225, A:Y.227, A:Y.285 Hydrogen bonds: A:D.32, A:G.34, A:G.79, A:D.80, A:D.80, A:N.125, A:T.223, A:T.223, A:T.224, A:T.224, A:T.224 Water bridges: A:R.77

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.207, G.208, G.264, T.265 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.207, A:T.265, A:N.280 Water bridges: A:G.208, A:G.264 SO4.3: 2 residues within 4Å: Chain A: G.57, T.58 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.58

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: G.79, S.299, D.301 Ligands: IVA-VAL-VAL-STA-ALA-STA.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.299, A:D.301 GOL.5: 6 residues within 4Å: Chain A: A.240, T.260, D.261, N.280, Y.283, W.294 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.261, A:Y.283 GOL.6: 3 residues within 4Å: Chain A: S.183, G.184, K.329 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.184, A:K.329, A:K.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dostal, J. et al., The crystal structure of the secreted aspartic protease 1 from Candida parapsilosis in complex with pepstatin A. J.Struct.Biol. (2009)

Release Date

2009-05-19

Peptides

Sapp1p-secreted aspartic protease 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Sapp1p-secreted aspartic protease 1

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