SMTL ID : 3fv5.2 (1 other biounit)

Crystal Structure of E. coli Topoisomerase IV co-complexed with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 1EU: 1-(4-acetyl-6-pyridin-3-yl-1H-benzimidazol-2-yl)-3-ethylurea(Non-covalent)

1EU.1: 14 residues within 4Å: Chain A: V.25, N.28, S.29, E.32, V.53, D.55, R.58, G.59, M.60, P.61, I.76, R.118, T.149, V.151 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.25, A:E.32, A:V.53, A:R.58, A:P.61, A:I.76, A:V.151 Hydrogen bonds: A:E.32, A:D.55, A:D.55, A:D.55 Water bridges: A:R.58, A:G.59, A:T.149 pi-Cation interactions: A:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, Y. et al., Design and syntheses of novel C7-derived-aminobenzimidazole ureas: bacterial gyrase/topoisomerase IV inhibitors with potent Gram-positve antibacterial activity. To be Published

Release Date

2010-01-26

Peptides

DNA topoisomerase 4 subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA topoisomerase 4 subunit B

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