- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.81 Å
- Oligo State
- homo-24-mer
- Ligands
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 36 x FE: FE (III) ION(Non-covalent)
FE.2: 3 residues within 4Å:- Chain A: M.73
- Chain B: M.73
- Ligands: HEM.1
No protein-ligand interaction detected (PLIP)FE.3: 5 residues within 4Å:- Chain A: E.39, E.72, H.75, E.148
- Ligands: IMD.10
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.39, A:E.39, A:E.72, A:H.75, A:E.148
FE.11: 5 residues within 4Å:- Chain B: E.39, E.72, H.75, E.148
- Ligands: IMD.16
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.39, B:E.39, B:E.72, B:H.75, B:E.148
FE.18: 3 residues within 4Å:- Chain C: M.73
- Chain D: M.73
- Ligands: HEM.17
No protein-ligand interaction detected (PLIP)FE.19: 5 residues within 4Å:- Chain C: E.39, E.72, H.75, E.148
- Ligands: IMD.26
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.39, C:E.39, C:E.72, C:H.75, C:E.148
FE.27: 5 residues within 4Å:- Chain D: E.39, E.72, H.75, E.148
- Ligands: IMD.32
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:E.39, D:E.39, D:E.72, D:H.75, D:E.148
FE.34: 3 residues within 4Å:- Chain E: M.73
- Chain F: M.73
- Ligands: HEM.33
No protein-ligand interaction detected (PLIP)FE.35: 5 residues within 4Å:- Chain E: E.39, E.72, H.75, E.148
- Ligands: IMD.42
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:E.39, E:E.39, E:E.72, E:H.75, E:E.148
FE.43: 5 residues within 4Å:- Chain F: E.39, E.72, H.75, E.148
- Ligands: IMD.48
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:E.39, F:E.39, F:E.72, F:H.75, F:E.148
FE.50: 3 residues within 4Å:- Chain G: M.73
- Chain H: M.73
- Ligands: HEM.49
No protein-ligand interaction detected (PLIP)FE.51: 5 residues within 4Å:- Chain G: E.39, E.72, H.75, E.148
- Ligands: IMD.58
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:E.39, G:E.39, G:E.72, G:H.75, G:E.148
FE.59: 5 residues within 4Å:- Chain H: E.39, E.72, H.75, E.148
- Ligands: IMD.64
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:E.39, H:E.39, H:E.72, H:H.75, H:E.148
FE.66: 3 residues within 4Å:- Chain I: M.73
- Chain J: M.73
- Ligands: HEM.65
No protein-ligand interaction detected (PLIP)FE.67: 5 residues within 4Å:- Chain I: E.39, E.72, H.75, E.148
- Ligands: IMD.74
5 PLIP interactions:5 interactions with chain I- Metal complexes: I:E.39, I:E.39, I:E.72, I:H.75, I:E.148
FE.75: 5 residues within 4Å:- Chain J: E.39, E.72, H.75, E.148
- Ligands: IMD.80
5 PLIP interactions:5 interactions with chain J- Metal complexes: J:E.39, J:E.39, J:E.72, J:H.75, J:E.148
FE.82: 3 residues within 4Å:- Chain K: M.73
- Chain L: M.73
- Ligands: HEM.81
No protein-ligand interaction detected (PLIP)FE.83: 5 residues within 4Å:- Chain K: E.39, E.72, H.75, E.148
- Ligands: IMD.90
5 PLIP interactions:5 interactions with chain K- Metal complexes: K:E.39, K:E.39, K:E.72, K:H.75, K:E.148
FE.91: 5 residues within 4Å:- Chain L: E.39, E.72, H.75, E.148
- Ligands: IMD.96
5 PLIP interactions:5 interactions with chain L- Metal complexes: L:E.39, L:E.39, L:E.72, L:H.75, L:E.148
FE.98: 3 residues within 4Å:- Chain M: M.73
- Chain N: M.73
- Ligands: HEM.97
No protein-ligand interaction detected (PLIP)FE.99: 5 residues within 4Å:- Chain M: E.39, E.72, H.75, E.148
- Ligands: IMD.106
5 PLIP interactions:5 interactions with chain M- Metal complexes: M:E.39, M:E.39, M:E.72, M:H.75, M:E.148
FE.107: 5 residues within 4Å:- Chain N: E.39, E.72, H.75, E.148
- Ligands: IMD.112
5 PLIP interactions:5 interactions with chain N- Metal complexes: N:E.39, N:E.39, N:E.72, N:H.75, N:E.148
FE.114: 3 residues within 4Å:- Chain O: M.73
- Chain P: M.73
- Ligands: HEM.113
No protein-ligand interaction detected (PLIP)FE.115: 5 residues within 4Å:- Chain O: E.39, E.72, H.75, E.148
- Ligands: IMD.122
5 PLIP interactions:5 interactions with chain O- Metal complexes: O:E.39, O:E.39, O:E.72, O:H.75, O:E.148
FE.123: 5 residues within 4Å:- Chain P: E.39, E.72, H.75, E.148
- Ligands: IMD.128
5 PLIP interactions:5 interactions with chain P- Metal complexes: P:E.39, P:E.39, P:E.72, P:H.75, P:E.148
FE.130: 3 residues within 4Å:- Chain Q: M.73
- Chain R: M.73
- Ligands: HEM.129
No protein-ligand interaction detected (PLIP)FE.131: 5 residues within 4Å:- Chain Q: E.39, E.72, H.75, E.148
- Ligands: IMD.138
5 PLIP interactions:5 interactions with chain Q- Metal complexes: Q:E.39, Q:E.39, Q:E.72, Q:H.75, Q:E.148
FE.139: 5 residues within 4Å:- Chain R: E.39, E.72, H.75, E.148
- Ligands: IMD.144
5 PLIP interactions:5 interactions with chain R- Metal complexes: R:E.39, R:E.39, R:E.72, R:H.75, R:E.148
FE.146: 3 residues within 4Å:- Chain S: M.73
- Chain T: M.73
- Ligands: HEM.145
No protein-ligand interaction detected (PLIP)FE.147: 5 residues within 4Å:- Chain S: E.39, E.72, H.75, E.148
- Ligands: IMD.154
5 PLIP interactions:5 interactions with chain S- Metal complexes: S:E.39, S:E.39, S:E.72, S:H.75, S:E.148
FE.155: 5 residues within 4Å:- Chain T: E.39, E.72, H.75, E.148
- Ligands: IMD.160
5 PLIP interactions:5 interactions with chain T- Metal complexes: T:E.39, T:E.39, T:E.72, T:H.75, T:E.148
FE.162: 3 residues within 4Å:- Chain U: M.73
- Chain V: M.73
- Ligands: HEM.161
No protein-ligand interaction detected (PLIP)FE.163: 5 residues within 4Å:- Chain U: E.39, E.72, H.75, E.148
- Ligands: IMD.170
5 PLIP interactions:5 interactions with chain U- Metal complexes: U:E.39, U:E.39, U:E.72, U:H.75, U:E.148
FE.171: 5 residues within 4Å:- Chain V: E.39, E.72, H.75, E.148
- Ligands: IMD.176
5 PLIP interactions:5 interactions with chain V- Metal complexes: V:E.39, V:E.39, V:E.72, V:H.75, V:E.148
FE.178: 3 residues within 4Å:- Chain W: M.73
- Chain X: M.73
- Ligands: HEM.177
No protein-ligand interaction detected (PLIP)FE.179: 5 residues within 4Å:- Chain W: E.39, E.72, H.75, E.148
- Ligands: IMD.186
5 PLIP interactions:5 interactions with chain W- Metal complexes: W:E.39, W:E.39, W:E.72, W:H.75, W:E.148
FE.187: 5 residues within 4Å:- Chain X: E.39, E.72, H.75, E.148
- Ligands: IMD.192
5 PLIP interactions:5 interactions with chain X- Metal complexes: X:E.39, X:E.39, X:E.72, X:H.75, X:E.148
- 72 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.4: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.5: 1 residues within 4Å:- Chain A: D.55
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.55, H2O.2, H2O.2, H2O.2, H2O.10
MG.6: 5 residues within 4Å:- Chain A: D.130
- Chain C: D.130
- Chain E: D.130
- Ligands: MG.22, MG.38
No protein-ligand interaction detected (PLIP)MG.12: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.13: 1 residues within 4Å:- Chain B: D.55
6 PLIP interactions:1 interactions with chain B, 5 Ligand-Water interactions- Metal complexes: B:D.55, H2O.2, H2O.10, H2O.10, H2O.10, H2O.13
MG.14: 1 residues within 4Å:- Chain B: E.87
No protein-ligand interaction detected (PLIP)MG.20: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.21: 1 residues within 4Å:- Chain C: D.55
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.55, H2O.16, H2O.16, H2O.16, H2O.24
MG.22: 5 residues within 4Å:- Chain A: D.130
- Chain C: D.130
- Chain E: D.130
- Ligands: MG.6, MG.38
No protein-ligand interaction detected (PLIP)MG.28: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.29: 1 residues within 4Å:- Chain D: D.55
6 PLIP interactions:1 interactions with chain D, 5 Ligand-Water interactions- Metal complexes: D:D.55, H2O.17, H2O.24, H2O.24, H2O.24, H2O.27
MG.30: 1 residues within 4Å:- Chain D: E.87
No protein-ligand interaction detected (PLIP)MG.36: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.37: 1 residues within 4Å:- Chain E: D.55
5 PLIP interactions:1 interactions with chain E, 4 Ligand-Water interactions- Metal complexes: E:D.55, H2O.30, H2O.30, H2O.30, H2O.38
MG.38: 5 residues within 4Å:- Chain A: D.130
- Chain C: D.130
- Chain E: D.130
- Ligands: MG.6, MG.22
No protein-ligand interaction detected (PLIP)MG.44: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.45: 1 residues within 4Å:- Chain F: D.55
6 PLIP interactions:1 interactions with chain F, 5 Ligand-Water interactions- Metal complexes: F:D.55, H2O.31, H2O.38, H2O.39, H2O.39, H2O.41
MG.46: 1 residues within 4Å:- Chain F: E.87
No protein-ligand interaction detected (PLIP)MG.52: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.53: 1 residues within 4Å:- Chain G: D.55
5 PLIP interactions:1 interactions with chain G, 4 Ligand-Water interactions- Metal complexes: G:D.55, H2O.44, H2O.44, H2O.44, H2O.52
MG.54: 5 residues within 4Å:- Chain G: D.130
- Chain I: D.130
- Chain K: D.130
- Ligands: MG.70, MG.86
No protein-ligand interaction detected (PLIP)MG.60: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.61: 1 residues within 4Å:- Chain H: D.55
6 PLIP interactions:1 interactions with chain H, 5 Ligand-Water interactions- Metal complexes: H:D.55, H2O.45, H2O.53, H2O.53, H2O.53, H2O.55
MG.62: 1 residues within 4Å:- Chain H: E.87
No protein-ligand interaction detected (PLIP)MG.68: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.69: 1 residues within 4Å:- Chain I: D.55
5 PLIP interactions:1 interactions with chain I, 4 Ligand-Water interactions- Metal complexes: I:D.55, H2O.58, H2O.58, H2O.58, H2O.66
MG.70: 5 residues within 4Å:- Chain G: D.130
- Chain I: D.130
- Chain K: D.130
- Ligands: MG.54, MG.86
No protein-ligand interaction detected (PLIP)MG.76: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.77: 1 residues within 4Å:- Chain J: D.55
6 PLIP interactions:1 interactions with chain J, 5 Ligand-Water interactions- Metal complexes: J:D.55, H2O.59, H2O.67, H2O.67, H2O.67, H2O.69
MG.78: 1 residues within 4Å:- Chain J: E.87
No protein-ligand interaction detected (PLIP)MG.84: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.85: 1 residues within 4Å:- Chain K: D.55
5 PLIP interactions:1 interactions with chain K, 4 Ligand-Water interactions- Metal complexes: K:D.55, H2O.72, H2O.72, H2O.72, H2O.80
MG.86: 5 residues within 4Å:- Chain G: D.130
- Chain I: D.130
- Chain K: D.130
- Ligands: MG.54, MG.70
No protein-ligand interaction detected (PLIP)MG.92: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.93: 1 residues within 4Å:- Chain L: D.55
6 PLIP interactions:1 interactions with chain L, 5 Ligand-Water interactions- Metal complexes: L:D.55, H2O.73, H2O.81, H2O.81, H2O.81, H2O.83
MG.94: 1 residues within 4Å:- Chain L: E.87
No protein-ligand interaction detected (PLIP)MG.100: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.101: 1 residues within 4Å:- Chain M: D.55
5 PLIP interactions:1 interactions with chain M, 4 Ligand-Water interactions- Metal complexes: M:D.55, H2O.86, H2O.87, H2O.87, H2O.94
MG.102: 5 residues within 4Å:- Chain M: D.130
- Chain O: D.130
- Chain Q: D.130
- Ligands: MG.118, MG.134
No protein-ligand interaction detected (PLIP)MG.108: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.109: 1 residues within 4Å:- Chain N: D.55
6 PLIP interactions:1 interactions with chain N, 5 Ligand-Water interactions- Metal complexes: N:D.55, H2O.87, H2O.95, H2O.95, H2O.95, H2O.98
MG.110: 1 residues within 4Å:- Chain N: E.87
No protein-ligand interaction detected (PLIP)MG.116: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.117: 1 residues within 4Å:- Chain O: D.55
5 PLIP interactions:1 interactions with chain O, 4 Ligand-Water interactions- Metal complexes: O:D.55, H2O.101, H2O.101, H2O.101, H2O.109
MG.118: 5 residues within 4Å:- Chain M: D.130
- Chain O: D.130
- Chain Q: D.130
- Ligands: MG.102, MG.134
No protein-ligand interaction detected (PLIP)MG.124: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.125: 1 residues within 4Å:- Chain P: D.55
6 PLIP interactions:1 interactions with chain P, 5 Ligand-Water interactions- Metal complexes: P:D.55, H2O.101, H2O.109, H2O.109, H2O.109, H2O.112
MG.126: 1 residues within 4Å:- Chain P: E.87
No protein-ligand interaction detected (PLIP)MG.132: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.133: 1 residues within 4Å:- Chain Q: D.55
5 PLIP interactions:1 interactions with chain Q, 4 Ligand-Water interactions- Metal complexes: Q:D.55, H2O.115, H2O.115, H2O.115, H2O.123
MG.134: 5 residues within 4Å:- Chain M: D.130
- Chain O: D.130
- Chain Q: D.130
- Ligands: MG.102, MG.118
No protein-ligand interaction detected (PLIP)MG.140: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.141: 1 residues within 4Å:- Chain R: D.55
6 PLIP interactions:1 interactions with chain R, 5 Ligand-Water interactions- Metal complexes: R:D.55, H2O.115, H2O.123, H2O.123, H2O.123, H2O.126
MG.142: 1 residues within 4Å:- Chain R: E.87
No protein-ligand interaction detected (PLIP)MG.148: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.149: 1 residues within 4Å:- Chain S: D.55
5 PLIP interactions:1 interactions with chain S, 4 Ligand-Water interactions- Metal complexes: S:D.55, H2O.129, H2O.129, H2O.129, H2O.137
MG.150: 5 residues within 4Å:- Chain S: D.130
- Chain U: D.130
- Chain W: D.130
- Ligands: MG.166, MG.182
No protein-ligand interaction detected (PLIP)MG.156: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.157: 1 residues within 4Å:- Chain T: D.55
6 PLIP interactions:1 interactions with chain T, 5 Ligand-Water interactions- Metal complexes: T:D.55, H2O.129, H2O.137, H2O.137, H2O.137, H2O.140
MG.158: 1 residues within 4Å:- Chain T: E.87
No protein-ligand interaction detected (PLIP)MG.164: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.165: 1 residues within 4Å:- Chain U: D.55
5 PLIP interactions:1 interactions with chain U, 4 Ligand-Water interactions- Metal complexes: U:D.55, H2O.143, H2O.143, H2O.143, H2O.151
MG.166: 5 residues within 4Å:- Chain S: D.130
- Chain U: D.130
- Chain W: D.130
- Ligands: MG.150, MG.182
No protein-ligand interaction detected (PLIP)MG.172: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.173: 1 residues within 4Å:- Chain V: D.55
6 PLIP interactions:1 interactions with chain V, 5 Ligand-Water interactions- Metal complexes: V:D.55, H2O.144, H2O.151, H2O.151, H2O.152, H2O.154
MG.174: 1 residues within 4Å:- Chain V: E.87
No protein-ligand interaction detected (PLIP)MG.180: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.181: 1 residues within 4Å:- Chain W: D.55
5 PLIP interactions:1 interactions with chain W, 4 Ligand-Water interactions- Metal complexes: W:D.55, H2O.157, H2O.157, H2O.157, H2O.165
MG.182: 5 residues within 4Å:- Chain S: D.130
- Chain U: D.130
- Chain W: D.130
- Ligands: MG.150, MG.166
No protein-ligand interaction detected (PLIP)MG.188: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.189: 1 residues within 4Å:- Chain X: D.55
6 PLIP interactions:1 interactions with chain X, 5 Ligand-Water interactions- Metal complexes: X:D.55, H2O.158, H2O.166, H2O.166, H2O.166, H2O.168
MG.190: 1 residues within 4Å:- Chain X: E.87
No protein-ligand interaction detected (PLIP)- 12 x NA: SODIUM ION(Non-functional Binders)
NA.7: 7 residues within 4Å:- Chain A: Q.172
- Chain D: Q.172
- Chain M: Q.172
- Chain P: Q.172
- Ligands: CL.9, NA.103, CL.105
5 PLIP interactions:1 interactions with chain P, 1 interactions with chain D, 1 interactions with chain A, 2 interactions with chain M- Hydrogen bonds: P:Q.172, D:Q.172, A:Q.172, M:Q.172, M:Q.172
NA.23: 7 residues within 4Å:- Chain C: Q.172
- Chain F: Q.172
- Chain U: Q.172
- Chain X: Q.172
- Ligands: CL.25, NA.167, CL.169
5 PLIP interactions:2 interactions with chain X, 1 interactions with chain U, 1 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: X:Q.172, X:Q.172, U:Q.172, C:Q.172, F:Q.172
NA.39: 7 residues within 4Å:- Chain B: Q.172
- Chain E: Q.172
- Chain H: Q.172
- Chain K: Q.172
- Ligands: CL.41, NA.87, CL.89
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain K, 1 interactions with chain E, 2 interactions with chain H- Hydrogen bonds: B:Q.172, K:Q.172, E:Q.172, H:Q.172, H:Q.172
NA.55: 7 residues within 4Å:- Chain G: Q.172
- Chain J: Q.172
- Chain S: Q.172
- Chain V: Q.172
- Ligands: CL.57, NA.151, CL.153
5 PLIP interactions:1 interactions with chain G, 1 interactions with chain V, 2 interactions with chain S, 1 interactions with chain J- Hydrogen bonds: G:Q.172, V:Q.172, S:Q.172, S:Q.172, J:Q.172
NA.71: 7 residues within 4Å:- Chain I: Q.172
- Chain L: Q.172
- Chain O: Q.172
- Chain R: Q.172
- Ligands: CL.73, NA.119, CL.121
5 PLIP interactions:1 interactions with chain I, 1 interactions with chain L, 1 interactions with chain R, 2 interactions with chain O- Hydrogen bonds: I:Q.172, L:Q.172, R:Q.172, O:Q.172, O:Q.172
NA.87: 7 residues within 4Å:- Chain B: Q.172
- Chain E: Q.172
- Chain H: Q.172
- Chain K: Q.172
- Ligands: NA.39, CL.41, CL.89
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain K, 1 interactions with chain E, 1 interactions with chain H- Hydrogen bonds: B:Q.172, B:Q.172, K:Q.172, E:Q.172, H:Q.172
NA.103: 7 residues within 4Å:- Chain A: Q.172
- Chain D: Q.172
- Chain M: Q.172
- Chain P: Q.172
- Ligands: NA.7, CL.9, CL.105
5 PLIP interactions:1 interactions with chain D, 1 interactions with chain A, 2 interactions with chain M, 1 interactions with chain P- Hydrogen bonds: D:Q.172, A:Q.172, M:Q.172, M:Q.172, P:Q.172
NA.119: 7 residues within 4Å:- Chain I: Q.172
- Chain L: Q.172
- Chain O: Q.172
- Chain R: Q.172
- Ligands: NA.71, CL.73, CL.121
5 PLIP interactions:1 interactions with chain O, 2 interactions with chain R, 1 interactions with chain L, 1 interactions with chain I- Hydrogen bonds: O:Q.172, R:Q.172, R:Q.172, L:Q.172, I:Q.172
NA.135: 7 residues within 4Å:- Chain N: Q.172
- Chain Q: Q.172
- Chain T: Q.172
- Chain W: Q.172
- Ligands: CL.137, NA.183, CL.185
5 PLIP interactions:1 interactions with chain W, 1 interactions with chain T, 1 interactions with chain Q, 2 interactions with chain N- Hydrogen bonds: W:Q.172, T:Q.172, Q:Q.172, N:Q.172, N:Q.172
NA.151: 7 residues within 4Å:- Chain G: Q.172
- Chain J: Q.172
- Chain S: Q.172
- Chain V: Q.172
- Ligands: NA.55, CL.57, CL.153
5 PLIP interactions:1 interactions with chain G, 1 interactions with chain V, 1 interactions with chain J, 2 interactions with chain S- Hydrogen bonds: G:Q.172, V:Q.172, J:Q.172, S:Q.172, S:Q.172
NA.167: 7 residues within 4Å:- Chain C: Q.172
- Chain F: Q.172
- Chain U: Q.172
- Chain X: Q.172
- Ligands: NA.23, CL.25, CL.169
5 PLIP interactions:2 interactions with chain U, 1 interactions with chain C, 1 interactions with chain F, 1 interactions with chain X- Hydrogen bonds: U:Q.172, U:Q.172, C:Q.172, F:Q.172, X:Q.172
NA.183: 7 residues within 4Å:- Chain N: Q.172
- Chain Q: Q.172
- Chain T: Q.172
- Chain W: Q.172
- Ligands: NA.135, CL.137, CL.185
5 PLIP interactions:1 interactions with chain N, 2 interactions with chain W, 1 interactions with chain Q, 1 interactions with chain T- Hydrogen bonds: N:Q.172, W:Q.172, W:Q.172, Q:Q.172, T:Q.172
- 36 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 8 residues within 4Å:- Chain A: R.126, K.138
- Chain C: R.126, K.138
- Chain E: R.126, K.138
- Ligands: CL.24, CL.40
Ligand excluded by PLIPCL.9: 7 residues within 4Å:- Chain A: R.169
- Chain D: R.169
- Chain M: R.169
- Chain P: R.169
- Ligands: NA.7, NA.103, CL.105
Ligand excluded by PLIPCL.15: 8 residues within 4Å:- Chain B: R.126, K.138
- Chain L: R.126, K.138
- Chain P: R.126, K.138
- Ligands: CL.95, CL.127
Ligand excluded by PLIPCL.24: 8 residues within 4Å:- Chain A: R.126, K.138
- Chain C: R.126, K.138
- Chain E: R.126, K.138
- Ligands: CL.8, CL.40
Ligand excluded by PLIPCL.25: 7 residues within 4Å:- Chain C: R.169
- Chain F: R.169
- Chain U: R.169
- Chain X: R.169
- Ligands: NA.23, NA.167, CL.169
Ligand excluded by PLIPCL.31: 8 residues within 4Å:- Chain D: R.126, K.138
- Chain N: R.126, K.138
- Chain X: R.126, K.138
- Ligands: CL.111, CL.191
Ligand excluded by PLIPCL.40: 8 residues within 4Å:- Chain A: R.126, K.138
- Chain C: R.126, K.138
- Chain E: R.126, K.138
- Ligands: CL.8, CL.24
Ligand excluded by PLIPCL.41: 7 residues within 4Å:- Chain B: R.169
- Chain E: R.169
- Chain H: R.169
- Chain K: R.169
- Ligands: NA.39, NA.87, CL.89
Ligand excluded by PLIPCL.47: 8 residues within 4Å:- Chain F: R.126, K.138
- Chain H: R.126, K.138
- Chain V: R.126, K.138
- Ligands: CL.63, CL.175
Ligand excluded by PLIPCL.56: 8 residues within 4Å:- Chain G: R.126, K.138
- Chain I: R.126, K.138
- Chain K: R.126, K.138
- Ligands: CL.72, CL.88
Ligand excluded by PLIPCL.57: 7 residues within 4Å:- Chain G: R.169
- Chain J: R.169
- Chain S: R.169
- Chain V: R.169
- Ligands: NA.55, NA.151, CL.153
Ligand excluded by PLIPCL.63: 8 residues within 4Å:- Chain F: R.126, K.138
- Chain H: R.126, K.138
- Chain V: R.126, K.138
- Ligands: CL.47, CL.175
Ligand excluded by PLIPCL.72: 8 residues within 4Å:- Chain G: R.126, K.138
- Chain I: R.126, K.138
- Chain K: R.126, K.138
- Ligands: CL.56, CL.88
Ligand excluded by PLIPCL.73: 7 residues within 4Å:- Chain I: R.169
- Chain L: R.169
- Chain O: R.169
- Chain R: R.169
- Ligands: NA.71, NA.119, CL.121
Ligand excluded by PLIPCL.79: 8 residues within 4Å:- Chain J: R.126, K.138
- Chain R: R.126, K.138
- Chain T: R.126, K.138
- Ligands: CL.143, CL.159
Ligand excluded by PLIPCL.88: 8 residues within 4Å:- Chain G: R.126, K.138
- Chain I: R.126, K.138
- Chain K: R.126, K.138
- Ligands: CL.56, CL.72
Ligand excluded by PLIPCL.89: 7 residues within 4Å:- Chain B: R.169
- Chain E: R.169
- Chain H: R.169
- Chain K: R.169
- Ligands: NA.39, CL.41, NA.87
Ligand excluded by PLIPCL.95: 8 residues within 4Å:- Chain B: R.126, K.138
- Chain L: R.126, K.138
- Chain P: R.126, K.138
- Ligands: CL.15, CL.127
Ligand excluded by PLIPCL.104: 8 residues within 4Å:- Chain M: R.126, K.138
- Chain O: R.126, K.138
- Chain Q: R.126, K.138
- Ligands: CL.120, CL.136
Ligand excluded by PLIPCL.105: 7 residues within 4Å:- Chain A: R.169
- Chain D: R.169
- Chain M: R.169
- Chain P: R.169
- Ligands: NA.7, CL.9, NA.103
Ligand excluded by PLIPCL.111: 8 residues within 4Å:- Chain D: R.126, K.138
- Chain N: R.126, K.138
- Chain X: R.126, K.138
- Ligands: CL.31, CL.191
Ligand excluded by PLIPCL.120: 8 residues within 4Å:- Chain M: R.126, K.138
- Chain O: R.126, K.138
- Chain Q: R.126, K.138
- Ligands: CL.104, CL.136
Ligand excluded by PLIPCL.121: 7 residues within 4Å:- Chain I: R.169
- Chain L: R.169
- Chain O: R.169
- Chain R: R.169
- Ligands: NA.71, CL.73, NA.119
Ligand excluded by PLIPCL.127: 8 residues within 4Å:- Chain B: R.126, K.138
- Chain L: R.126, K.138
- Chain P: R.126, K.138
- Ligands: CL.15, CL.95
Ligand excluded by PLIPCL.136: 8 residues within 4Å:- Chain M: R.126, K.138
- Chain O: R.126, K.138
- Chain Q: R.126, K.138
- Ligands: CL.104, CL.120
Ligand excluded by PLIPCL.137: 7 residues within 4Å:- Chain N: R.169
- Chain Q: R.169
- Chain T: R.169
- Chain W: R.169
- Ligands: NA.135, NA.183, CL.185
Ligand excluded by PLIPCL.143: 8 residues within 4Å:- Chain J: R.126, K.138
- Chain R: R.126, K.138
- Chain T: R.126, K.138
- Ligands: CL.79, CL.159
Ligand excluded by PLIPCL.152: 8 residues within 4Å:- Chain S: R.126, K.138
- Chain U: R.126, K.138
- Chain W: R.126, K.138
- Ligands: CL.168, CL.184
Ligand excluded by PLIPCL.153: 7 residues within 4Å:- Chain G: R.169
- Chain J: R.169
- Chain S: R.169
- Chain V: R.169
- Ligands: NA.55, CL.57, NA.151
Ligand excluded by PLIPCL.159: 8 residues within 4Å:- Chain J: R.126, K.138
- Chain R: R.126, K.138
- Chain T: R.126, K.138
- Ligands: CL.79, CL.143
Ligand excluded by PLIPCL.168: 8 residues within 4Å:- Chain S: R.126, K.138
- Chain U: R.126, K.138
- Chain W: R.126, K.138
- Ligands: CL.152, CL.184
Ligand excluded by PLIPCL.169: 7 residues within 4Å:- Chain C: R.169
- Chain F: R.169
- Chain U: R.169
- Chain X: R.169
- Ligands: NA.23, CL.25, NA.167
Ligand excluded by PLIPCL.175: 8 residues within 4Å:- Chain F: R.126, K.138
- Chain H: R.126, K.138
- Chain V: R.126, K.138
- Ligands: CL.47, CL.63
Ligand excluded by PLIPCL.184: 8 residues within 4Å:- Chain S: R.126, K.138
- Chain U: R.126, K.138
- Chain W: R.126, K.138
- Ligands: CL.152, CL.168
Ligand excluded by PLIPCL.185: 7 residues within 4Å:- Chain N: R.169
- Chain Q: R.169
- Chain T: R.169
- Chain W: R.169
- Ligands: NA.135, CL.137, NA.183
Ligand excluded by PLIPCL.191: 8 residues within 4Å:- Chain D: R.126, K.138
- Chain N: R.126, K.138
- Chain X: R.126, K.138
- Ligands: CL.31, CL.111
Ligand excluded by PLIP- 24 x IMD: IMIDAZOLE(Non-covalent)
IMD.10: 11 residues within 4Å:- Chain A: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.3
Ligand excluded by PLIPIMD.16: 11 residues within 4Å:- Chain B: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.11
Ligand excluded by PLIPIMD.26: 11 residues within 4Å:- Chain C: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.19
Ligand excluded by PLIPIMD.32: 11 residues within 4Å:- Chain D: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.27
Ligand excluded by PLIPIMD.42: 11 residues within 4Å:- Chain E: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.35
Ligand excluded by PLIPIMD.48: 11 residues within 4Å:- Chain F: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.43
Ligand excluded by PLIPIMD.58: 11 residues within 4Å:- Chain G: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.51
Ligand excluded by PLIPIMD.64: 11 residues within 4Å:- Chain H: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.59
Ligand excluded by PLIPIMD.74: 11 residues within 4Å:- Chain I: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.67
Ligand excluded by PLIPIMD.80: 11 residues within 4Å:- Chain J: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.75
Ligand excluded by PLIPIMD.90: 11 residues within 4Å:- Chain K: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.83
Ligand excluded by PLIPIMD.96: 11 residues within 4Å:- Chain L: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.91
Ligand excluded by PLIPIMD.106: 11 residues within 4Å:- Chain M: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.99
Ligand excluded by PLIPIMD.112: 11 residues within 4Å:- Chain N: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.107
Ligand excluded by PLIPIMD.122: 11 residues within 4Å:- Chain O: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.115
Ligand excluded by PLIPIMD.128: 11 residues within 4Å:- Chain P: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.123
Ligand excluded by PLIPIMD.138: 11 residues within 4Å:- Chain Q: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.131
Ligand excluded by PLIPIMD.144: 11 residues within 4Å:- Chain R: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.139
Ligand excluded by PLIPIMD.154: 11 residues within 4Å:- Chain S: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.147
Ligand excluded by PLIPIMD.160: 11 residues within 4Å:- Chain T: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.155
Ligand excluded by PLIPIMD.170: 11 residues within 4Å:- Chain U: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.163
Ligand excluded by PLIPIMD.176: 11 residues within 4Å:- Chain V: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.171
Ligand excluded by PLIPIMD.186: 11 residues within 4Å:- Chain W: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.179
Ligand excluded by PLIPIMD.192: 11 residues within 4Å:- Chain X: L.38, E.39, A.42, Y.46, E.72, G.114, E.115, A.118, Y.122, E.148
- Ligands: FE.187
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Seattle Structural Genomics Center for Infectious Disease (SSGCID), Crystal structure of ferritin from Brucella melitensis. To be Published
- Release Date
- 2009-02-03
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
BI
AJ
BK
AL
BM
AN
BO
AP
BQ
AR
BS
AT
BU
AV
BW
AX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.81 Å
- Oligo State
- homo-24-mer
- Ligands
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 36 x FE: FE (III) ION(Non-covalent)
- 72 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 12 x NA: SODIUM ION(Non-functional Binders)
- 36 x CL: CHLORIDE ION(Non-functional Binders)
- 24 x IMD: IMIDAZOLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Seattle Structural Genomics Center for Infectious Disease (SSGCID), Crystal structure of ferritin from Brucella melitensis. To be Published
- Release Date
- 2009-02-03
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
BI
AJ
BK
AL
BM
AN
BO
AP
BQ
AR
BS
AT
BU
AV
BW
AX
B