SMTL ID : 3fvc.1

Crystal structure of a trimeric variant of the Epstein-Barr virus glycoprotein B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-trimer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: Y.108, Y.120, A.122, V.123, N.141 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.122 Hydrogen bonds: A:N.141 NAG.2: 1 residues within 4Å: Chain A: N.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.268 NAG.3: 4 residues within 4Å: Chain A: N.607, T.608, S.609 Chain B: F.49 No protein-ligand interaction detected (PLIP) NAG.4: 5 residues within 4Å: Chain B: Y.108, Y.120, A.122, V.123, N.141 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.122 Hydrogen bonds: B:N.141 NAG.5: 1 residues within 4Å: Chain B: N.268 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.268 NAG.6: 4 residues within 4Å: Chain B: N.607, T.608, S.609 Chain C: F.49 No protein-ligand interaction detected (PLIP) NAG.7: 5 residues within 4Å: Chain C: Y.108, Y.120, A.122, V.123, N.141 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:A.122 Hydrogen bonds: C:N.141 NAG.8: 1 residues within 4Å: Chain C: N.268 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.268 NAG.9: 4 residues within 4Å: Chain A: F.49 Chain C: N.607, T.608, S.609 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Backovic, M. et al., Structure of a trimeric variant of the Epstein-Barr virus glycoprotein B. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-03-17

Peptides

Glycoprotein GP110: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Glycoprotein GP110