SMTL ID : 3fve.2 (1 other biounit)

Crystal structure of diaminopimelate epimerase Mycobacterium tuberculosis DapF

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.1: 10 residues within 4Å: Chain A: G.9, T.10, Q.11, N.12, N.90, G.91, V.92, R.93, V.94, S.226 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.12 DTT.4: 10 residues within 4Å: Chain B: G.9, T.10, Q.11, N.12, N.90, G.91, V.92, R.93, V.94, S.226 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.12

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.72, W.73, R.107, F.110, V.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.72, A:W.73, A:R.107, A:V.111 GOL.3: 2 residues within 4Å: Chain A: H.124, R.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.270, A:R.270 GOL.5: 5 residues within 4Å: Chain B: D.72, W.73, R.107, F.110, V.111 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.73, B:R.107, B:V.111 GOL.6: 2 residues within 4Å: Chain B: H.124, R.270 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.270, B:R.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Usha, V. et al., Structure of the diaminopimelate epimerase DapF from Mycobacterium tuberculosis. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-01-27

Peptides

Diaminopimelate epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Diaminopimelate epimerase

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