SMTL ID : 3fvn.1 (2 other biounits)

Crystal structure of the human glutamate receptor, GluR5, ligand-binding core in complex with 9-deoxy-neodysiherbaine A in space group P1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: T.91, V.93, S.140, T.143, F.144, D.211, K.213 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.213 GOL.2: 5 residues within 4Å: Chain A: P.103, T.106, S.212, K.213, G.214 No protein-ligand interaction detected (PLIP) GOL.3: 4 residues within 4Å: Chain A: F.100, K.102, R.226, T.230 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.102, A:K.102, A:R.226, A:T.230 Water bridges: A:R.226 GOL.4: 4 residues within 4Å: Chain A: L.54, V.55, P.56, G.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.58 Water bridges: A:G.58

1 x 9DX: (2R,3aR,7R,7aR)-2-[(2S)-2-amino-3-hydroxy-3-oxo-propyl]-7-hydroxy-3,3a,5,6,7,7a-hexahydrofuro[4,5-b]pyran-2-carboxylic acid(Non-covalent)

9DX.5: 15 residues within 4Å: Chain A: E.12, Y.60, P.87, L.88, T.89, R.94, V.136, G.139, S.140, T.141, S.172, M.188, E.189, S.192, Y.215 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.60, A:Y.60, A:V.136 Hydrogen bonds: A:P.87, A:P.87, A:T.89, A:S.140, A:T.141, A:T.141, A:E.189, A:E.189, A:E.189 Salt bridges: A:R.94

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: R.30, K.53, L.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.54 Salt bridges: A:R.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unno, M. et al., Binding and Selectivity of the Marine Toxin Neodysiherbaine A and Its Synthetic Analogues to GluK1 and GluK2 Kainate Receptors. J.Mol.Biol. (2011)

Release Date

2010-01-19

Peptides

Glutamate receptor, ionotropic kainate 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamate receptor, ionotropic kainate 1

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