SMTL ID : 3fvq.1

Crystal structure of the nucleotide binding domain FbpC complexed with ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: F.14, T.17, V.19, S.39, G.40, C.41, G.42, K.43, T.44, T.45, Q.87 Chain B: R.134, E.138, S.140, G.141, G.142, Q.143 Ligands: CA.2 29 PLIP interactions: 18 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:G.40, A:G.40, A:C.41, A:G.42, A:K.43, A:T.44, A:T.45, A:Q.87, B:R.134, B:S.140, B:G.141, B:G.142, B:Q.143, B:Q.143, B:Q.143 Water bridges: A:G.37, A:S.39, A:K.43, A:K.43, A:K.43, A:T.44, A:D.163, B:R.134, B:E.138, B:A.168, B:A.168 Salt bridges: A:K.43, A:K.43 pi-Stacking: A:F.14 ATP.4: 19 residues within 4Å: Chain A: R.134, E.138, S.140, G.141, G.142, Q.143 Chain B: F.14, Q.15, T.17, V.19, S.39, G.40, C.41, G.42, K.43, T.44, T.45, Q.87 Ligands: CA.5 31 PLIP interactions: 17 interactions with chain B, 14 interactions with chain A Hydrogen bonds: B:G.40, B:G.40, B:C.41, B:G.42, B:K.43, B:T.44, B:T.45, B:T.45, B:Q.87, A:R.134, A:S.140, A:S.140, A:G.141, A:G.142, A:Q.143, A:Q.143, A:Q.143 Water bridges: B:K.43, B:K.43, B:E.164, B:E.164, A:R.134, A:H.137, A:E.138, A:E.138, A:A.168, A:A.168 Salt bridges: B:K.43, B:K.43 pi-Stacking: B:F.14, B:F.14

3 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.2: 3 residues within 4Å: Chain A: T.44, Q.87 Ligands: ATP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.44, H2O.1, H2O.1 CA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.5: 3 residues within 4Å: Chain B: T.44, Q.87 Ligands: ATP.4 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.44, H2O.10, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newstead, S. et al., Insights into how nucleotide-binding domains power ABC transport. Structure (2009)

Release Date

2009-08-25

Peptides

Fe(3+) ions import ATP-binding protein fbpC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fe(3+) ions import ATP-binding protein fbpC