SMTL ID : 3fvy.1

Crystal structure of human Dipeptidyl Peptidase III

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.452, E.453, H.457, E.510 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.452, A:H.457, A:E.510, H2O.6, H2O.23

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: L.165, G.166, G.169, I.170 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.166, A:G.169, H2O.3, H2O.10, H2O.19

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: N.480, I.487, Q.488, S.489, T.633 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bezerra, G.A. et al., Entropy-driven binding of opioid peptides induces a large domain motion in human dipeptidyl peptidase III. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2009-02-03

Peptides

Dipeptidyl-peptidase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dipeptidyl-peptidase 3