SMTL ID : 3fw9.1

Structure of berberine bridge enzyme in complex with (S)-scoulerine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Covalent)

NAG-NAG-MAN.1: 6 residues within 4Å: Chain A: N.13, R.27, F.28, L.31, L.51, N.99 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.31 Hydrogen bonds: A:R.27, A:R.27

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 30 residues within 4Å: Chain A: L.74, R.75, S.76, G.77, G.78, H.79, S.80, Y.81, S.85, L.97, S.116, G.139, W.140, C.141, V.144, G.145, G.147, G.148, H.149, G.154, F.155, G.200, G.201, G.204, A.205, I.206, Y.431, N.433, H.434 Ligands: SLX.3 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:H.79, A:Y.81, A:V.144 Hydrogen bonds: A:L.74, A:S.76, A:G.77, A:G.78, A:H.79, A:S.80, A:S.85, A:S.85, A:S.116, A:W.140, A:C.141, A:G.145, A:G.145, A:G.148, A:H.149, A:F.155, A:F.155, A:G.201, A:I.206, A:I.206, A:N.433, A:N.433, A:N.433 Water bridges: A:G.200, A:V.202, A:H.434

1 x SLX: (13aS)-3,10-dimethoxy-5,8,13,13a-tetrahydro-6H-isoquino[3,2-a]isoquinoline-2,9-diol(Non-covalent)

SLX.3: 13 residues within 4Å: Chain A: Y.81, W.140, C.141, M.157, S.255, L.257, D.327, F.331, F.361, A.363, N.365, E.392 Ligands: FAD.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.140, A:L.257, A:A.363 Hydrogen bonds: A:D.327, A:N.365 Salt bridges: A:E.392 pi-Stacking: A:W.140, A:F.361

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: N.446, T.448, V.449 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.446

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: D.20, D.22 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.20, A:D.22, H2O.1, H2O.1, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Winkler, A. et al., Structural roles of biocovalent flaninylation in berberine bridge enzyme. to be published

Release Date

2009-05-19

Peptides

Reticuline oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reticuline oxidase