SMTL ID : 3fwa.1

Structure of berberine bridge enzyme, C166A variant in complex with (S)-reticuline

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Covalent)

NAG-NAG-MAN.1: 6 residues within 4Å: Chain A: N.13, R.27, F.28, L.31, L.51, N.99 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.31 Hydrogen bonds: A:R.27, A:R.27

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 30 residues within 4Å: Chain A: L.74, R.75, S.76, G.77, G.78, H.79, S.80, Y.81, S.85, L.97, S.116, G.139, W.140, A.141, V.144, G.145, G.147, G.148, H.149, G.154, F.155, G.200, G.201, G.204, A.205, I.206, F.326, Y.431, N.433 Ligands: REN.3 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:H.79, A:Y.81, A:W.140, A:A.141, A:V.144, A:F.326 Hydrogen bonds: A:L.74, A:S.76, A:G.77, A:G.78, A:H.79, A:S.80, A:S.85, A:S.85, A:S.116, A:W.140, A:G.145, A:G.145, A:G.148, A:H.149, A:F.155, A:F.155, A:G.201, A:I.206, A:I.206, A:N.433, A:N.433 Water bridges: A:A.141, A:A.141, A:G.200, A:V.202, A:H.487

1 x REN: (S)-reticuline(Non-covalent)

REN.3: 11 residues within 4Å: Chain A: Y.81, W.140, L.257, L.270, L.310, F.326, D.327, F.361, E.392, A.396 Ligands: FAD.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.81, A:W.140, A:L.257, A:L.257 Hydrogen bonds: A:Y.81, A:D.327 Water bridges: A:N.365, A:N.365 Salt bridges: A:E.392 pi-Stacking: A:W.140, A:W.140, A:F.331, A:F.361

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: N.446, T.448, V.449 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.446

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: D.20, D.22 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.20, H2O.1, H2O.1, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Winkler, A. et al., Structural roles of biocovalent flaninylation in berberine bridge enzyme. to be published

Release Date

2009-05-19

Peptides

Reticuline oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reticuline oxidase