SMTL ID : 3fxg.1

Crystal structure of rhamnonate dehydratase from Gibberella zeae complexed with Mg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-octamer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: K.185, D.222, E.248, E.275 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.222, A:E.248, A:E.275, H2O.2, H2O.4 MG.2: 4 residues within 4Å: Chain B: K.185, D.222, E.248, E.275 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.222, B:E.248, B:E.275, H2O.17, H2O.18 MG.3: 4 residues within 4Å: Chain C: K.185, D.222, E.248, E.275 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.222, C:E.248, C:E.275, H2O.34, H2O.39 MG.4: 4 residues within 4Å: Chain D: K.185, D.222, E.248, E.275 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.222, D:E.248, D:E.275, H2O.54, H2O.55 MG.5: 4 residues within 4Å: Chain E: K.185, D.222, E.248, E.275 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.222, E:E.248, E:E.275, H2O.67, H2O.71 MG.6: 4 residues within 4Å: Chain F: K.185, D.222, E.248, E.275 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.222, F:E.248, F:E.275, H2O.83, H2O.87 MG.7: 4 residues within 4Å: Chain G: K.185, D.222, E.248, E.275 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.222, G:E.248, G:E.275, H2O.99, H2O.101 MG.8: 5 residues within 4Å: Chain H: K.185, D.222, E.248, E.275, H.325 5 PLIP interactions: 2 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:D.222, H:E.248, H2O.114, H2O.115, H2O.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal structure of rhamnonate dehydratase from Gibberella zeae complexed with Mg. To be Published

Release Date

2009-02-03

Peptides

Rhamnonate dehydratase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Rhamnonate dehydratase