SMTL ID : 3fyc.2 (1 other biounit)

Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: K.174 Ligands: PO4.3 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.174 PO4.2: 1 residues within 4Å: Chain A: K.46 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.46 PO4.3: 2 residues within 4Å: Chain A: K.174 Ligands: PO4.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.174 PO4.4: 2 residues within 4Å: Chain A: K.34, Y.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.60 Salt bridges: A:K.34 PO4.5: 2 residues within 4Å: Chain A: Y.121, K.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.121 Water bridges: A:K.125 Salt bridges: A:K.125, A:K.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pulicherla, N. et al., Structural and functional divergence within the Dim1/KsgA family of rRNA methyltransferases. J.Mol.Biol. (2009)

Release Date

2009-06-30

Peptides

Probable dimethyladenosine transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Probable dimethyladenosine transferase

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