SMTL ID : 3fys.1

Crystal Structure of DegV, a fatty acid binding protein from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 19 residues within 4Å: Chain A: L.62, T.95, S.96, Q.97, I.126, S.127, C.154, A.191, F.193, R.206, F.226, I.231, I.266, I.299, H.302, L.303, G.309, I.310, C.311 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.62, A:A.191, A:F.193, A:R.206, A:F.226, A:I.231, A:I.266, A:I.299, A:I.299, A:H.302, A:L.303 Hydrogen bonds: A:T.95, A:T.95 Water bridges: A:R.206, A:R.206, A:R.206, A:R.206 Salt bridges: A:R.206

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: I.152, R.190, A.191, Y.192, H.225, F.226 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.191, A:Y.192, A:F.226

7 x BR: BROMIDE ION(Non-covalent)

BR.3: 4 residues within 4Å: Chain A: G.205, R.206, S.208, S.209 Ligand excluded by PLIP BR.4: 2 residues within 4Å: Chain A: M.194, R.240 Ligand excluded by PLIP BR.5: 4 residues within 4Å: Chain A: D.137, V.140, I.143, D.144 Ligand excluded by PLIP BR.6: 3 residues within 4Å: Chain A: G.111, Y.114, N.142 Ligand excluded by PLIP BR.7: 2 residues within 4Å: Chain A: A.172, D.177 Ligand excluded by PLIP BR.8: 3 residues within 4Å: Chain A: R.52, M.59, I.75 Ligand excluded by PLIP BR.9: 3 residues within 4Å: Chain A: D.197, L.198, K.221 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nan, J. et al., Structure of a fatty acid-binding protein from Bacillus subtilis determined by sulfur-SAD phasing using in-house chromium radiation. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-05-12

Peptides

Protein degV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein degV