SMTL ID : 3g05.1

Crystal structure of N-terminal domain (2-550) of E.coli MnmG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.49 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 10 residues within 4Å: Chain A: G.41, H.42, A.43, G.44, T.180, V.181, G.182, G.395, Q.396, A.406 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.42, A:G.44, A:G.182, A:Q.396 SO4.2: 4 residues within 4Å: Chain A: R.230, R.364, Y.367 Chain B: Q.148 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.148, A:Y.367 Salt bridges: A:R.230, A:R.364 SO4.3: 10 residues within 4Å: Chain B: G.41, H.42, A.43, G.44, T.180, V.181, G.182, G.395, Q.396, A.406 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.42, B:A.43, B:G.44, B:Q.396 SO4.4: 4 residues within 4Å: Chain A: Q.148 Chain B: R.230, R.364, Y.367 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.367, A:Q.148 Salt bridges: B:R.230, B:R.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, R. et al., Structure-function analysis of Escherichia coli MnmG (GidA), a highly conserved tRNA-modifying enzyme. J.Bacteriol. (2009)

Release Date

2009-10-20

Peptides

tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG