SMTL ID : 3g0a.1

Mth0212 with two bound manganese ions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.151, N.153, H.248 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.151, H2O.2, H2O.3 MN.2: 2 residues within 4Å: Chain A: N.12, E.38 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.38, A:E.38, H2O.2

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: R.83, E.84, G.85, G.87, D.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.84, A:G.85, A:D.92, A:D.92

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 3 residues within 4Å: Chain A: R.157, E.158, R.178 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.158 Salt bridges: A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lakomek, K. et al., Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA. J.Mol.Biol. (2010)

Release Date

2010-03-09

Peptides

Exodeoxyribonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Exodeoxyribonuclease

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