SMTL ID : 3g14.1

Crystal structure of nitroreductase family protein (YP_877874.1) from Clostridium novyi NT at 1.75 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.11, K.12, S.13 Chain B: N.42 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:N.42, A:S.13, A:S.13 Water bridges: A:R.11, A:R.11 Salt bridges: A:R.11 SO4.3: 4 residues within 4Å: Chain A: N.42 Chain B: R.11, K.12, S.13 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.13, A:N.42 Water bridges: B:R.11, B:S.13, A:N.42 Salt bridges: B:R.11

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: S.39, W.40, I.99, I.102, D.103, I.106 Chain B: W.124 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.106, B:W.124 Hydrogen bonds: A:W.40, A:D.103 ACT.4: 3 residues within 4Å: Chain B: E.135, I.139, D.141 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.135 Water bridges: B:D.141 ACT.5: 5 residues within 4Å: Chain A: E.3, Y.5 Chain B: K.29, D.117, E.118 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.5 Salt bridges: B:K.29 ACT.6: 7 residues within 4Å: Chain A: W.124 Chain B: S.39, W.40, I.99, I.102, D.103, I.106 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:W.124, B:I.106 Hydrogen bonds: B:W.40, B:D.103

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain B: D.32, M.35, R.36, P.165, K.166, K.167 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.32, B:K.167, B:K.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of nitroreductase family protein (YP_877874.1) from Clostridium novyi NT at 1.75 A resolution. To be published

Release Date

2009-02-17

Peptides

Nitroreductase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nitroreductase family protein