SMTL ID : 3g1p.1

Crystals structure of PhnP from E.coli K-12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.21, C.23, C.26, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.23, A:C.26, A:H.225 ZN.5: 4 residues within 4Å: Chain B: C.21, C.23, C.26, H.225 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.21, B:C.23, B:C.26, B:H.225

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 6 residues within 4Å: Chain A: H.76, H.78, H.143, D.164 Ligands: MN.3, MLT.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.76, A:H.78, A:H.143, A:D.164 MN.3: 6 residues within 4Å: Chain A: D.80, H.81, D.164, H.222 Ligands: MN.2, MLT.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.81, A:D.164, A:D.164, A:H.222, H2O.12 MN.6: 6 residues within 4Å: Chain B: H.76, H.78, H.143, D.164 Ligands: MN.7, MLT.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.76, B:H.78, B:H.143, B:D.164 MN.7: 6 residues within 4Å: Chain B: D.80, H.81, D.164, H.222 Ligands: MN.6, MLT.8 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.81, B:D.164, B:D.164, B:H.222, H2O.31

2 x MLT: D-MALATE(Non-covalent)

MLT.4: 12 residues within 4Å: Chain A: A.13, H.76, H.78, D.80, H.81, H.143, D.164, H.200 Chain B: R.89, D.109 Ligands: MN.2, MN.3 17 PLIP interactions: 11 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:H.78 Hydrogen bonds: A:D.80, B:D.109 Water bridges: A:A.13, A:M.79, A:D.80, A:H.200, B:R.89, B:R.89, B:R.89, B:R.89 Salt bridges: A:H.78, A:H.78, A:H.143, A:H.200, A:H.222, B:R.89 MLT.8: 12 residues within 4Å: Chain A: R.89, D.109 Chain B: A.13, H.76, H.78, D.80, H.81, H.143, D.164, H.200 Ligands: MN.6, MN.7 16 PLIP interactions: 6 interactions with chain A, 10 interactions with chain B Hydrogen bonds: A:D.109, B:D.80 Water bridges: A:R.89, A:R.89, A:R.89, A:R.89, B:A.13, B:M.79, B:D.80 Salt bridges: A:R.89, B:H.78, B:H.78, B:H.143, B:H.200, B:H.222 Hydrophobic interactions: B:H.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Podzelinska, K. et al., Crystals structure of PhnP from E.coli K-12. To be Published

Release Date

2009-03-03

Peptides

Protein phnP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein phnP

Related Entries With Identical Sequence