SMTL ID : 3g27.1

Structure of a putative bacteriophage protein from Escherichia coli str. K-12 substr. MG1655

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.13, R.16, C.21, C.54, C.57 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.13, A:C.21, A:C.54, A:C.57 ZN.4: 5 residues within 4Å: Chain B: C.13, R.16, C.21, C.54, C.57 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.13, B:C.21, B:C.54, B:C.57

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: G.19, C.21 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.19, A:C.21, H2O.1, H2O.1, H2O.1 CA.5: 2 residues within 4Å: Chain B: G.19, C.21 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:G.19, B:C.21, H2O.3, H2O.3, H2O.3

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: T.65, H.66, F.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.66 EDO.6: 3 residues within 4Å: Chain B: T.65, H.66, F.67 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.66 Water bridges: B:H.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., Structure of a putative bacteriophage protein from Escherichia coli str. K-12 substr. MG1655. TO BE PUBLISHED

Release Date

2009-03-24

Peptides

82 prophage-derived uncharacterized protein ybcO: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

82 prophage-derived uncharacterized protein ybcO