SMTL ID : 3g28.1

Crystal structure of the C-terminal domain of the Rous Sarcoma Virus capsid protein: mutant D179N, low pH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 3 residues within 4Å: Chain A: G.67, E.68, K.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.71, A:K.71 Water bridges: A:T.65 NO3.2: 5 residues within 4Å: Chain A: W.4, N.30 Chain B: D.42, R.45, Q.46 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.45, B:Q.46, A:W.4, A:N.30 Water bridges: A:W.4 NO3.4: 3 residues within 4Å: Chain B: G.67, E.68, K.71 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.71, B:K.71 Water bridges: B:E.68, B:E.68 NO3.5: 5 residues within 4Å: Chain A: D.42, R.45, Q.46 Chain B: W.4, N.30 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.45, A:Q.46, B:W.4, B:N.30 Water bridges: B:W.4

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: K.24, E.27 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.24 GOL.6: 2 residues within 4Å: Chain B: K.24, E.27 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bailey, G.D. et al., Proton-linked dimerization of a retroviral capsid protein initiates capsid assembly. Structure (2009)

Release Date

2009-06-02

Peptides

Gag polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Gag polyprotein

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