SMTL ID : 3g2d.2 (1 other biounit)

Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x DC- DA- DG- DG: 5'-D(*CP*GP*CP*G*CP*AP*GP*GP*C)-3'(Non-covalent)

DC-DA-DG-DG.1: 12 residues within 4Å: Chain A: E.38, K.40, R.65, Y.68, R.96, N.114, M.117, R.209 Chain B: C.1, C.2, T.3, G.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.16, A:K.40, A:Q.45, A:Q.45 Water bridges: A:N.12 Salt bridges: A:R.15, A:R.15, A:R.19, A:K.20

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 3 residues within 4Å: Chain A: K.183, E.186, N.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.183, A:N.187

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: R.48, R.51 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.48, A:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lakomek, K. et al., Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA. J.Mol.Biol. (2010)

Release Date

2010-03-09

Peptides

Exodeoxyribonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Exodeoxyribonuclease

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