SMTL ID : 3g2f.1 (1 other biounit)

Crystal structure of the kinase domain of bone morphogenetic protein receptor type II (BMPR2) at 2.35 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: I.21, G.22, R.23, G.24, R.25, Y.26, G.27, V.29, A.40, K.42, M.91, E.92, Y.94, S.98, R.149, N.150, L.152, D.163 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.24, A:R.25, A:Y.26, A:G.27, A:E.92, A:Y.94, A:S.98, A:S.98, A:N.150 Water bridges: A:R.149, A:N.150 Salt bridges: A:K.42, A:K.42

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.150, D.163 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.163, H2O.3, H2O.4

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: R.149, T.191, R.193, N.254, H.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.255 Water bridges: A:R.193 Salt bridges: A:R.149, A:R.193, A:H.255

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: K.269, Q.270, R.271, P.272, K.273, W.296 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.269, A:R.271, A:P.272, A:K.273 Water bridges: A:Q.270, A:F.274 EDO.5: 7 residues within 4Å: Chain A: N.68, R.115, H.118, S.119, R.122, T.158, M.317 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.68, A:N.68, A:H.118, A:R.122 EDO.6: 7 residues within 4Å: Chain A: E.198, V.204, N.205, A.212, Q.215, A.300, E.301 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.205, A:Q.215, A:E.301 Water bridges: A:Q.215, A:E.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Structural consequences of BMPR2 kinase domain mutations causing pulmonary arterial hypertension. Sci Rep (2019)

Release Date

2009-02-17

Peptides

Bone morphogenetic protein receptor type-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bone morphogenetic protein receptor type-2

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