SMTL ID : 3g2g.1 (2 other biounits)

S437Y Mutant of human muscle pyruvate kinase, isoform M2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: T.434, K.435, S.436, G.437, R.438, Y.439 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.434, A:K.435, A:S.436, A:S.436, A:G.437, A:Y.439 SO4.2: 3 residues within 4Å: Chain A: H.276, E.277, R.280 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.276 Salt bridges: A:H.276, A:R.280 SO4.7: 6 residues within 4Å: Chain B: T.434, K.435, S.436, G.437, R.438, Y.439 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.434, B:K.435, B:S.436, B:G.437, B:Y.439 SO4.8: 3 residues within 4Å: Chain B: S.79, H.80, G.81 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.81 Salt bridges: B:H.80 SO4.9: 3 residues within 4Å: Chain B: H.276, E.277, R.280 4 PLIP interactions: 4 interactions with chain B Water bridges: B:H.276, B:E.277 Salt bridges: B:H.276, B:R.280 SO4.22: 6 residues within 4Å: Chain C: T.434, K.435, S.436, G.437, R.438, Y.439 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.434, C:K.435, C:S.436, C:G.437, C:Y.439 SO4.23: 4 residues within 4Å: Chain C: S.79, H.80, G.81, K.208 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.79, C:G.81 Salt bridges: C:H.80 SO4.24: 2 residues within 4Å: Chain C: H.80, R.122 5 PLIP interactions: 5 interactions with chain C Water bridges: C:N.77, C:R.122, C:K.209 Salt bridges: C:H.80, C:R.122 SO4.25: 3 residues within 4Å: Chain C: H.276, E.277, R.280 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:H.276, C:R.280 SO4.33: 7 residues within 4Å: Chain D: T.434, K.435, S.436, G.437, R.438, Y.439, F.523 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:T.434, D:K.435, D:S.436, D:S.436, D:G.437, D:Y.439 SO4.34: 3 residues within 4Å: Chain D: S.79, H.80, G.81 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.81 Salt bridges: D:H.80 SO4.35: 3 residues within 4Å: Chain D: K.268, R.438, H.441 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:K.268, D:H.441 SO4.36: 3 residues within 4Å: Chain D: H.276, E.277, R.280 3 PLIP interactions: 3 interactions with chain D Water bridges: D:H.276 Salt bridges: D:H.276, D:R.280

31 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: R.75 Ligands: UNX.6 Ligand excluded by PLIP UNX.4: 4 residues within 4Å: Chain A: T.434, K.435, T.456, R.457 Ligand excluded by PLIP UNX.5: 3 residues within 4Å: Chain A: R.344, S.348 Chain B: V.308 Ligand excluded by PLIP UNX.6: 7 residues within 4Å: Chain A: N.77, S.79, D.115, T.116, S.245, K.272 Ligands: UNX.3 Ligand excluded by PLIP UNX.10: 6 residues within 4Å: Chain B: N.77, S.79, D.115, T.116, S.245, K.272 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain B: R.75, N.77 Ligand excluded by PLIP UNX.12: 2 residues within 4Å: Chain B: H.80, R.122 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain B: E.262, K.263 Ligand excluded by PLIP UNX.14: 5 residues within 4Å: Chain B: A.295, R.296, G.297, D.298, T.330 Ligand excluded by PLIP UNX.15: 4 residues within 4Å: Chain B: G.48, N.72, H.466, I.471 Ligand excluded by PLIP UNX.16: 5 residues within 4Å: Chain B: C.319, N.320, K.324, D.359, R.447 Ligand excluded by PLIP UNX.17: 5 residues within 4Å: Chain A: T.343, A.345 Chain B: Q.331, E.334, E.346 Ligand excluded by PLIP UNX.18: 5 residues within 4Å: Chain A: N.352 Chain B: Q.312, K.313, N.352, D.356 Ligand excluded by PLIP UNX.19: 7 residues within 4Å: Chain B: M.336, I.337, E.366, G.370, D.371, Y.372, P.373 Ligand excluded by PLIP UNX.20: 4 residues within 4Å: Chain B: V.253, H.254, R.257, A.288 Ligand excluded by PLIP UNX.21: 3 residues within 4Å: Chain B: R.281, D.283, E.284 Ligand excluded by PLIP UNX.26: 2 residues within 4Å: Chain C: R.75 Ligands: UNX.29 Ligand excluded by PLIP UNX.27: 4 residues within 4Å: Chain C: T.434, K.435, T.456, R.457 Ligand excluded by PLIP UNX.28: 4 residues within 4Å: Chain C: P.41, L.382, R.385, E.386 Ligand excluded by PLIP UNX.29: 7 residues within 4Å: Chain C: N.77, S.79, D.115, T.116, S.245, K.272 Ligands: UNX.26 Ligand excluded by PLIP UNX.30: 5 residues within 4Å: Chain C: T.97, Y.107, P.109, V.110, R.463 Ligand excluded by PLIP UNX.31: 5 residues within 4Å: Chain C: Q.19, H.21, A.22, R.34, D.36 Ligand excluded by PLIP UNX.32: 4 residues within 4Å: Chain C: T.330, M.362, L.363, S.364 Ligand excluded by PLIP UNX.37: 4 residues within 4Å: Chain D: K.272, E.274, D.298 Ligands: UNX.38 Ligand excluded by PLIP UNX.38: 4 residues within 4Å: Chain D: R.75, N.77 Ligands: UNX.37, UNX.39 Ligand excluded by PLIP UNX.39: 7 residues within 4Å: Chain D: N.77, S.79, D.115, T.116, S.245, K.272 Ligands: UNX.38 Ligand excluded by PLIP UNX.40: 3 residues within 4Å: Chain D: G.261, E.262, K.263 Ligand excluded by PLIP UNX.41: 3 residues within 4Å: Chain C: F.28 Chain D: L.396, E.399 Ligand excluded by PLIP UNX.42: 5 residues within 4Å: Chain D: R.94, V.112, D.238, D.240, R.463 Ligand excluded by PLIP UNX.43: 3 residues within 4Å: Chain D: P.55, R.58, S.59 Ligand excluded by PLIP UNX.44: 4 residues within 4Å: Chain D: T.434, K.435, T.456, R.457 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Allali-Hassani, A. et al., S437Y Mutant of human muscle pyruvate kinase, isoform M2. To be Published

Release Date

2009-03-03

Peptides

Pyruvate kinase isozymes M1/M2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyruvate kinase isozymes M1/M2

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