SMTL ID : 3g3l.1

Crystal structure of putative membrane-associated protein of unknown function (YP_211325.1) from Bacteroides fragilis NCTC 9343 at 2.20 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: S.132, E.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.133 Water bridges: A:S.132, A:S.134

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Q.49, V.50, N.51 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.50 Water bridges: A:N.51 GOL.3: 7 residues within 4Å: Chain A: L.37, G.38, D.39, K.40, E.48, V.50, Y.57 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.37, A:D.39, A:E.48 Water bridges: A:K.53 GOL.4: 4 residues within 4Å: Chain A: G.65, Y.66, S.94, E.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.65, A:Y.66 Water bridges: A:D.23, A:Y.66 GOL.5: 6 residues within 4Å: Chain A: E.127, V.128, K.130, S.132, E.206, Q.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.130, A:E.206, A:F.247, A:Q.249 GOL.6: 7 residues within 4Å: Chain A: K.124, L.207, T.208, G.209, D.210, V.211, Q.230 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.209, A:V.211 Water bridges: A:K.124, A:T.208 GOL.7: 7 residues within 4Å: Chain A: P.183, V.184, L.265, G.266, Y.267, T.268, N.302 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.265, A:T.268, A:N.302 Water bridges: A:T.268, A:T.268 GOL.8: 7 residues within 4Å: Chain A: D.112, I.113, D.175, G.176, S.177, V.274, S.275 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.113, A:I.113, A:D.175, A:S.275, A:S.275 Water bridges: A:I.178 GOL.9: 7 residues within 4Å: Chain A: E.213, V.214, A.215, A.216, P.217, K.285, Y.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.286 GOL.10: 6 residues within 4Å: Chain A: A.24, T.25, T.26, G.27, N.244, A.245 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.24, A:A.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative membrane-associated protein of unknown function (YP_211325.1) from Bacteroides fragilis NCTC 9343 at 2.20 A resolution. To be published

Release Date

2009-02-24

Peptides

Putative uncharacterized membrane-associated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized membrane-associated protein