SMTL ID : 3g3m.1

Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 5-fluoro-6-iodo-UMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x 5FU: 5-FLUORO-URIDINE-5'-MONOPHOSPHATE(Covalent)

5FU.1: 16 residues within 4Å: Chain A: S.56, D.58, K.80, H.82, D.111, K.113, M.170, S.171, P.216, Q.229, Y.231, G.249, R.250 Chain B: D.116, I.117, T.120 18 PLIP interactions: 15 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.56, A:D.58, A:K.80, A:D.111, A:K.113, A:S.171, A:S.171, A:S.171, A:Q.229, A:Y.231, A:G.249, A:R.250, B:D.116, B:T.120, B:T.120 Water bridges: A:G.217, A:V.218 Salt bridges: A:R.250 5FU.2: 16 residues within 4Å: Chain A: D.116, I.117, T.120 Chain B: S.56, D.58, K.80, H.82, D.111, K.113, M.170, S.171, P.216, Q.229, Y.231, G.249, R.250 14 PLIP interactions: 2 interactions with chain A, 12 interactions with chain B Hydrogen bonds: A:D.116, A:T.120, B:S.56, B:K.80, B:K.113, B:S.171, B:S.171, B:S.171, B:Q.229, B:G.249, B:R.250 Water bridges: B:G.217, B:V.218 Salt bridges: B:R.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bello, A.M. et al., Structure-activity relationships of orotidine-5'-monophosphate decarboxylase inhibitors as anticancer agents. J.Med.Chem. (2009)

Release Date

2009-03-03

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uridine 5'-monophosphate synthase

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