SMTL ID : 3g4f.2 (1 other biounit)

Crystal Structure of (+)- -Cadinene Synthase from Gossypium arboreum in complex with 2-fluorofarnesyl diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x FPF: (2Z,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate(Non-covalent)

FPF.1: 16 residues within 4Å: Chain A: E.275, W.279, D.307, E.385, R.448, D.451, E.455, L.526, Y.527, E.529, Y.535, V.536, A.540 Ligands: MG.2, MG.3, MG.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.275, A:E.455, A:Y.527, A:Y.527, A:A.540 Hydrogen bonds: A:E.455 Water bridges: A:D.311 Salt bridges: A:R.448 Halogen bonds: A:E.455

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.307, D.311 Ligands: FPF.1, MG.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.307, A:D.307, A:D.311, H2O.2 MG.3: 5 residues within 4Å: Chain A: D.307, D.311, E.385 Ligands: FPF.1, MG.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.307, A:E.385 MG.4: 4 residues within 4Å: Chain A: R.448, D.451, E.455 Ligands: FPF.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.451, A:E.455

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gennadios, H.A. et al., Crystal structure of (+)-delta-cadinene synthase from Gossypium arboreum and evolutionary divergence of metal binding motifs for catalysis. Biochemistry (2009)

Release Date

2009-06-23

Peptides

(+)-delta-cadinene synthase isozyme XC1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

(+)-delta-cadinene synthase isozyme XC1

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