SMTL ID : 3g5v.1

Antibodies Specifically Targeting a Locally Misfolded Region of Tumor Associated EGFR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: Q.37, K.45, P.59, R.61, F.62, E.81, D.82 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.62 Hydrogen bonds: A:Q.37, A:R.61 Salt bridges: A:K.45 ACT.2: 3 residues within 4Å: Chain A: N.32, A.92 Chain C: M.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.92

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain B: Y.148, E.151, V.153, T.168, P.170, A.171 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.148, B:V.153, B:V.153, B:A.171

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 2 residues within 4Å: Chain B: S.31, Y.54 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Water bridges: B:D.32, C:E.9 FMT.5: 3 residues within 4Å: Chain B: T.140, V.186, W.191 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.140 FMT.6: 3 residues within 4Å: Chain C: E.7, M.8, E.9 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garrett, T.P.J. et al., Antibodies specifically targeting a locally misfolded region of tumor associated EGFR. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2010-02-09

Peptides

806 light chain: A
808 heavy chain: B
Epidermal Growth Factor Receptor peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

806 light chain

808 heavy chain

Epidermal Growth Factor Receptor peptide

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