SMTL ID : 3g7e.1

Crystal structure of E. coli Gyrase B co-complexed with PROP-2-YN-1-YL {[5-(4-PIPERIDIN-1-YL-2-PYRIDIN-3-YL-1,3-THIAZOL-5-YL)-1H-PYRAZOL-3-YL]METHYL}CARBAMATE inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x B46: prop-2-yn-1-yl {[5-(4-piperidin-1-yl-2-pyridin-3-yl-1,3-thiazol-5-yl)-1H-pyrazol-3-yl]methyl}carbamate(Non-covalent)

B46.1: 20 residues within 4Å: Chain A: V.29, N.32, A.33, D.35, E.36, D.59, R.62, G.63, I.64, P.65, M.81, G.88, F.90, D.91, D.92, V.106, L.116, R.122, T.151, V.153 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.29, A:I.64, A:P.65, A:V.106, A:L.116, A:V.153 Hydrogen bonds: A:N.32, A:D.59, A:R.122, A:T.151 Water bridges: A:D.59, A:G.61 pi-Cation interactions: A:R.62 B46.2: 20 residues within 4Å: Chain B: V.29, N.32, A.33, D.35, E.36, D.59, R.62, G.63, I.64, P.65, M.81, G.88, F.90, D.91, D.92, V.106, L.116, R.122, T.151, V.153 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:V.29, B:I.64, B:P.65, B:V.106, B:L.116, B:V.153 Hydrogen bonds: B:N.32, B:E.36, B:D.59, B:R.122 Water bridges: B:D.59, B:D.59, B:G.61, B:T.151 pi-Cation interactions: B:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ronkin, S.M. et al., Discovery of pyrazolthiazoles as novel and potent inhibitors of bacterial gyrase. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-02-09

Peptides

DNA gyrase subunit B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA gyrase subunit B