SMTL ID : 3g7q.1

Crystal structure of valine-pyruvate aminotransferase AvtA (NP_462565.1) from Salmonella typhimurium LT2 at 1.80 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: D.57, M.58, S.61, K.63, E.292, R.296 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: E.163, R.323 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: F.310, Q.313, R.314 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain B: D.57, M.58, S.61, K.63, E.292, R.296 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: E.163, R.323 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: F.310, Q.313, R.314 Ligand excluded by PLIP

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: F.231, K.308, Y.312 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.308 EDO.5: 7 residues within 4Å: Chain A: G.16, R.19, L.20, Y.357, Q.358, P.369, Y.372 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.20, A:Y.372 Water bridges: A:D.23, A:Q.358 EDO.6: 6 residues within 4Å: Chain A: N.82, A.85, V.86, R.89, E.97, P.98 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.89 EDO.10: 3 residues within 4Å: Chain B: F.231, K.308, Y.312 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.308 EDO.11: 7 residues within 4Å: Chain B: G.16, R.19, L.20, Y.357, Q.358, P.369, Y.372 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.20 Water bridges: B:D.23, B:Q.358 EDO.12: 6 residues within 4Å: Chain B: N.82, A.85, V.86, R.89, E.97, P.98 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of valine-pyruvate aminotransferase AvtA (NP_462565.1) from Salmonella typhimurium LT2 at 1.80 A resolution. To be published

Release Date

2009-03-03

Peptides

Valine-pyruvate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Valine-pyruvate aminotransferase