SMTL ID : 3g8y.1

CRYSTAL STRUCTURE OF A PUTATIVE HYDROLASE (BVU_4111) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.90 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.320, D.351, E.353 Ligand excluded by PLIP EDO.2: 5 residues within 4Å: Chain A: D.256, F.257, F.365, V.370, H.375 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: E.28, M.29, D.32 Chain B: F.95, P.96, S.98 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain A: G.122, S.123, R.125, F.232, S.233 Ligands: PEG.13 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: F.279, I.283 Chain B: D.188, V.189, R.192, I.283 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: Y.37, G.54, A.57, A.58, E.61, Y.293 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: K.64, L.197, G.198, W.199 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: F.343, V.348, K.350, E.366 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: T.261, H.285, I.287, Y.290, W.291, F.296 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: Y.39, S.41, R.320, L.321, S.324 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: I.136, G.171, E.172, S.174 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: K.346, A.347, R.349 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain B: R.320, D.351, E.353 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain B: D.256, F.257, F.365, V.370, H.375 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain A: F.95, P.96, S.98 Chain B: E.28, M.29, D.32 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: G.122, S.123, R.125, F.232, S.233 Ligands: PEG.26 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain A: D.188, V.189, R.192, I.283 Chain B: F.279, I.283 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain B: Y.37, G.54, A.57, A.58, E.61, Y.293 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain B: K.64, L.197, G.198, W.199 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain B: F.343, V.348, K.350, E.366 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain B: T.261, H.285, I.287, Y.290, W.291, F.296 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain B: Y.39, S.41, R.320, L.321, S.324 Ligand excluded by PLIP EDO.24: 4 residues within 4Å: Chain B: I.136, G.171, E.172, S.174 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain B: K.346, A.347, R.349 Ligand excluded by PLIP

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.13: 5 residues within 4Å: Chain A: S.123, G.124, R.125, W.183 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.141 Water bridges: A:S.123, A:D.143 PEG.26: 5 residues within 4Å: Chain B: S.123, G.124, R.125, W.183 Ligands: EDO.17 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.141 Water bridges: B:S.123, B:D.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of SusD/RagB-associated esterase-like protein (YP_001301335.1) from Bacteroides vulgatus ATCC 8482 at 1.90 A resolution. To be published

Release Date

2009-02-24

Peptides

SusD/RagB-associated esterase-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SusD/RagB-associated esterase-like protein