SMTL ID : 3g91.1

1.2 Angstrom structure of the exonuclease III homologue Mth0212

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: N.10, E.38, Y.111, N.114, D.151, N.153, L.221, H.248 Ligands: MG.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.10, A:N.114, A:D.151, A:N.153 Water bridges: A:Y.111, A:Y.111 Salt bridges: A:H.248

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.38 Ligands: PO4.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.38, H2O.1, H2O.3, H2O.5, H2O.7

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: R.48, R.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.48, A:R.51, A:R.51

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 6 residues within 4Å: Chain A: R.51, H.52, Y.56, R.57, S.58, F.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.52, A:Y.56, A:S.58

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 4 residues within 4Å: Chain A: V.3, K.5, D.32, E.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lakomek, K. et al., Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA. J.Mol.Biol. (2010)

Release Date

2010-03-09

Peptides

Exodeoxyribonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Exodeoxyribonuclease