SMTL ID : 3g9r.2 (1 other biounit)

Structure of the HIV-1 gp41 Membrane-Proximal Ectodomain Region in a Putative Prefusion Conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 1 residues within 4Å: Chain A: N.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.10

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 13 residues within 4Å: Chain A: F.12, T.15, N.16, W.19 Chain B: F.12, T.15, N.16, W.19 Chain C: W.11, F.12, T.15, N.16, W.19 6 PLIP interactions: 1 interactions with chain A, 4 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: A:N.16, C:W.11, C:F.12, C:T.15, B:T.15 Hydrogen bonds: C:W.19 MPD.3: 2 residues within 4Å: Chain A: W.11 Chain B: N.13 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Structure of the HIV-1 gp41 Membrane-Proximal Ectodomain Region in a Putative Prefusion Conformation. Biochemistry (2009)

Release Date

2009-05-12

Peptides

Fusion complex of HIV-1 Envelope glycoprotein and Saccharomyces cerevisiae General control protein GCN4: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Fusion complex of HIV-1 Envelope glycoprotein and Saccharomyces cerevisiae General control protein GCN4

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