SMTL ID : 3gbf.1

Phpd with cadmium complexed with hydroethylphosphonate (HEP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

2 x 2HE: (2-HYDROXYETHYL)PHOSPHONIC ACID(Non-covalent)

2HE.1: 11 residues within 4Å: Chain A: R.90, Y.98, L.113, N.126, H.129, E.176, H.182, Y.184, S.196 Chain B: K.16 Ligands: CD.14 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:R.90, A:N.126, A:S.196, A:S.196, B:K.16 Water bridges: A:R.90, B:K.16, B:K.16, B:K.16, B:K.16 2HE.15: 11 residues within 4Å: Chain A: K.16 Chain B: R.90, Y.98, L.113, N.126, H.129, E.176, H.182, Y.184, S.196 Ligands: CD.28 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:K.16, B:R.90, B:Y.98, B:N.126, B:S.196, B:S.196 Water bridges: A:K.16, A:K.16, A:K.16, A:K.16, B:R.90

26 x CD: CADMIUM ION(Non-covalent)

CD.2: 2 residues within 4Å: Chain A: C.180 Ligands: CD.3 Ligand excluded by PLIP CD.3: 2 residues within 4Å: Chain A: C.180 Ligands: CD.2 Ligand excluded by PLIP CD.4: 1 residues within 4Å: Chain A: D.189 Ligand excluded by PLIP CD.5: 1 residues within 4Å: Chain A: E.80 Ligand excluded by PLIP CD.6: 1 residues within 4Å: Chain A: D.309 Ligand excluded by PLIP CD.7: 1 residues within 4Å: Chain A: H.94 Ligand excluded by PLIP CD.8: 2 residues within 4Å: Chain A: H.10 Chain B: E.131 Ligand excluded by PLIP CD.9: 3 residues within 4Å: Chain A: D.142, H.160, H.163 Ligand excluded by PLIP CD.10: 1 residues within 4Å: Chain A: D.66 Ligand excluded by PLIP CD.11: 1 residues within 4Å: Chain A: H.75 Ligand excluded by PLIP CD.12: 1 residues within 4Å: Chain A: H.410 Ligand excluded by PLIP CD.13: 5 residues within 4Å: Chain A: D.294, D.295, Q.296, K.302, H.330 Ligand excluded by PLIP CD.14: 4 residues within 4Å: Chain A: H.129, E.176, H.182 Ligands: 2HE.1 Ligand excluded by PLIP CD.16: 2 residues within 4Å: Chain B: C.180 Ligands: CD.17 Ligand excluded by PLIP CD.17: 2 residues within 4Å: Chain B: C.180 Ligands: CD.16 Ligand excluded by PLIP CD.18: 1 residues within 4Å: Chain B: D.189 Ligand excluded by PLIP CD.19: 1 residues within 4Å: Chain B: E.80 Ligand excluded by PLIP CD.20: 1 residues within 4Å: Chain B: D.309 Ligand excluded by PLIP CD.21: 1 residues within 4Å: Chain B: H.94 Ligand excluded by PLIP CD.22: 2 residues within 4Å: Chain A: E.131 Chain B: H.10 Ligand excluded by PLIP CD.23: 3 residues within 4Å: Chain B: D.142, H.160, H.163 Ligand excluded by PLIP CD.24: 1 residues within 4Å: Chain B: D.66 Ligand excluded by PLIP CD.25: 1 residues within 4Å: Chain B: H.75 Ligand excluded by PLIP CD.26: 1 residues within 4Å: Chain B: H.410 Ligand excluded by PLIP CD.27: 5 residues within 4Å: Chain B: D.294, D.295, Q.296, K.302, H.330 Ligand excluded by PLIP CD.28: 4 residues within 4Å: Chain B: H.129, E.176, H.182 Ligands: 2HE.15 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cicchillio, R.M. et al., An Unusual Carbon-Carbon Bond Cleavage Reaction in the Biosynthesis of the Herbicide Phosphinothricin. To be Published

Release Date

2009-06-09

Peptides

PhpD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PhpD

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