SMTL ID : 3gbj.2 (2 other biounits)

Crystal structure of the motor domain of kinesin KIF13B bound with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: R.10, P.11, S.61, Q.101, T.102, G.103, S.104, G.105, K.106, S.107, Y.108 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.10, A:R.10, A:S.61, A:G.103, A:S.104, A:G.105, A:K.106, A:S.107, A:Y.108 Water bridges: A:R.8, A:T.102, A:K.106, A:S.107, A:S.107, A:T.109 Salt bridges: A:K.106 pi-Stacking: A:Y.108, A:Y.108 pi-Cation interactions: A:R.10

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: S.107 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.107, H2O.1, H2O.1, H2O.1, H2O.1

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 4 residues within 4Å: Chain A: Q.101, V.327, S.328, T.337 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: T.278, Y.343, R.346 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, Y. et al., Crystal structure of the motor domain of kinesin KIF13B bound with ADP. To be Published

Release Date

2009-03-03

Peptides

KIF13B protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

KIF13B protein

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