SMTL ID : 3gbr.1

Anthranilate phosphoribosyl-transferase (TRPD) double mutant D83G F149S from S. solfataricus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)

PRP.1: 14 residues within 4Å: Chain A: A.78, G.79, T.80, G.81, N.89, V.90, S.91, T.92, K.106, G.117, S.118, E.224 Ligands: MN.2, MN.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.79, A:S.91, A:S.91, A:T.92, A:T.92, A:S.118 Water bridges: A:T.80, A:R.164, A:N.174 Salt bridges: A:K.106, A:K.106, A:K.106 PRP.4: 13 residues within 4Å: Chain B: A.78, G.79, T.80, G.81, N.89, V.90, S.91, T.92, K.106, G.117, S.118, E.224 Ligands: MN.5 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.79, B:N.89, B:V.90, B:S.91, B:T.92, B:T.92, B:S.118 Water bridges: B:T.80, B:T.80, B:K.106 Salt bridges: B:K.106

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.223, E.224 Ligands: PRP.1, MN.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.223, A:E.224, H2O.4 MN.3: 5 residues within 4Å: Chain A: G.79, S.91, E.224 Ligands: PRP.1, MN.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.91, A:E.224, H2O.4 MN.5: 5 residues within 4Å: Chain B: G.79, S.91, E.224 Ligands: PRP.4, MN.6 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.91, B:E.224, H2O.9, H2O.10 MN.6: 3 residues within 4Å: Chain B: D.223, E.224 Ligands: MN.5 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.223, B:E.224, H2O.5

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 5 residues within 4Å: Chain A: E.35, I.36 Chain B: P.34, E.35, I.36 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.35, A:E.35, A:I.36, B:E.35, B:I.36 PEG.8: 3 residues within 4Å: Chain B: I.228, P.255, I.256 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.259

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 8 residues within 4Å: Chain B: R.46, E.50, R.170, T.171, I.172, N.174, I.175, H.197 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.170, B:R.170 Water bridges: B:R.46 GOL.10: 7 residues within 4Å: Chain B: E.123, G.126, Y.127, N.128, G.331, D.332, K.335 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.123, B:D.332, B:K.335, B:K.335 Water bridges: B:E.123, B:G.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schlee, S. et al., Activation of anthranilate phosphoribosyltransferase from Sulfolobus solfataricus by removal of magnesium inhibition and acceleration of product release. Biochemistry (2009)

Release Date

2009-12-15

Peptides

Anthranilate phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Anthranilate phosphoribosyltransferase