SMTL ID : 3gc2.1

1.85 Angstrom Crystal Structure of O-succinylbenzoate Synthase from Salmonella typhimurium in Complex with Succinic Acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 8 residues within 4Å: Chain A: K.134, K.136, D.164, K.238, S.265, S.266, G.291, T.294 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.294 Hydrogen bonds: A:D.164 Water bridges: A:K.134, A:K.134, A:K.134, A:K.136, A:K.238, A:S.265, A:G.291 Salt bridges: A:K.134, A:K.134, A:K.136, A:K.238 SIN.2: 6 residues within 4Å: Chain A: E.43, E.96, E.103, R.279, R.304 Ligands: NA.5 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.96, A:E.103, A:E.103 Water bridges: A:E.43, A:W.45, A:E.103, A:R.304 Salt bridges: A:R.279, A:R.304

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 8 residues within 4Å: Chain A: E.130, I.132, H.160, R.162, A.190, F.191, T.261, T.288 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:E.130, A:E.130, A:R.162

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: D.164, N.166, E.193, D.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.164, A:K.238 Water bridges: A:E.217 NA.5: 3 residues within 4Å: Chain A: E.43, E.96 Ligands: SIN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.43, A:E.43 Water bridges: A:E.96

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: R.11, Q.63 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: K.315, R.316 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.85 Angstrom Crystal Structure of O-succinylbenzoate Synthase from Salmonella typhimurium in Complex with Succinic Acid. To be Published

Release Date

2009-03-10

Peptides

o-succinylbenzoate synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

o-succinylbenzoate synthase