SMTL ID : 3gcb.1

GAL6 (YEAST BLEOMYCIN HYDROLASE) MUTANT C73A/DELTAK454

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-hexamer

Ligands

30 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.83, G.412, K.413, D.414 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: I.143, R.209 Chain F: Y.379 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: N.290, Y.296, D.320, N.321 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: R.191, K.192, S.195 Chain F: P.345, K.346 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: R.61, Q.65, E.358 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: N.83, G.412, K.413, D.414 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: I.143, R.209 Chain E: Y.379 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: N.290, Y.296, D.320, N.321 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain B: R.191, K.192, S.195 Chain E: P.345, K.346 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: R.61, Q.65, E.358 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain C: N.83, G.412, K.413, D.414 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain C: I.143, R.209 Chain D: Y.379 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain C: N.290, Y.296, D.320, N.321 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain C: R.191, K.192, S.195 Chain D: P.345, K.346 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain C: R.61, Q.65, E.358 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain D: N.83, G.412, K.413, D.414 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain C: Y.379 Chain D: I.143, R.209 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain D: N.290, Y.296, D.320, N.321 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Chain C: P.345, K.346 Chain D: R.191, K.192, S.195 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain D: R.61, Q.65, E.358 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain E: N.83, G.412, K.413, D.414 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain B: Y.379 Chain E: I.143, R.209 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain E: N.290, Y.296, D.320, N.321 Ligand excluded by PLIP SO4.32: 5 residues within 4Å: Chain B: P.345, K.346 Chain E: R.191, K.192, S.195 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain E: R.61, Q.65, E.358 Ligand excluded by PLIP SO4.36: 4 residues within 4Å: Chain F: N.83, G.412, K.413, D.414 Ligand excluded by PLIP SO4.37: 3 residues within 4Å: Chain A: Y.379 Chain F: I.143, R.209 Ligand excluded by PLIP SO4.38: 4 residues within 4Å: Chain F: N.290, Y.296, D.320, N.321 Ligand excluded by PLIP SO4.39: 5 residues within 4Å: Chain A: P.345, K.346 Chain F: R.191, K.192, S.195 Ligand excluded by PLIP SO4.40: 3 residues within 4Å: Chain F: R.61, Q.65, E.358 Ligand excluded by PLIP

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: Q.98, L.99, N.102, K.279, L.280, P.285, R.331, K.336, D.438 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.98, A:N.102, A:N.102, A:R.331, A:R.331, A:K.336, A:K.336 GOL.7: 6 residues within 4Å: Chain A: R.146, Y.150, W.463 Chain F: R.146, Q.149 Ligands: GOL.42 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.146, A:W.463 Water bridges: A:Q.149 GOL.13: 9 residues within 4Å: Chain B: Q.98, L.99, N.102, K.279, L.280, P.285, R.331, K.336, D.438 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.98, B:N.102, B:N.102, B:R.331, B:R.331, B:K.336, B:K.336 GOL.14: 6 residues within 4Å: Chain B: R.146, Y.150, W.463 Chain E: R.146, Q.149 Ligands: GOL.35 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.146, B:W.463 Water bridges: B:Q.149 GOL.20: 9 residues within 4Å: Chain C: Q.98, L.99, N.102, K.279, L.280, P.285, R.331, K.336, D.438 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Q.98, C:N.102, C:N.102, C:R.331, C:R.331, C:K.336, C:K.336 GOL.21: 6 residues within 4Å: Chain C: R.146, Y.150, W.463 Chain D: R.146, Q.149 Ligands: GOL.28 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.146, C:W.463 Water bridges: C:Q.149 GOL.27: 9 residues within 4Å: Chain D: Q.98, L.99, N.102, K.279, L.280, P.285, R.331, K.336, D.438 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:Q.98, D:N.102, D:N.102, D:R.331, D:R.331, D:K.336, D:K.336 Water bridges: D:T.284 GOL.28: 6 residues within 4Å: Chain C: R.146, Q.149 Chain D: R.146, Y.150, W.463 Ligands: GOL.21 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.146, D:W.463 Water bridges: D:Q.149 GOL.34: 9 residues within 4Å: Chain E: Q.98, L.99, N.102, K.279, L.280, P.285, R.331, K.336, D.438 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:Q.98, E:N.102, E:N.102, E:R.331, E:R.331, E:K.336, E:K.336 Water bridges: E:T.284 GOL.35: 6 residues within 4Å: Chain B: R.146, Q.149 Chain E: R.146, Y.150, W.463 Ligands: GOL.14 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:R.146, E:W.463 Water bridges: E:Q.149 GOL.41: 9 residues within 4Å: Chain F: Q.98, L.99, N.102, K.279, L.280, P.285, R.331, K.336, D.438 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:Q.98, F:N.102, F:N.102, F:R.331, F:R.331, F:K.336, F:K.336 Water bridges: F:T.284 GOL.42: 6 residues within 4Å: Chain A: R.146, Q.149 Chain F: R.146, Y.150, W.463 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:R.146, F:W.463 Water bridges: F:Q.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, W. et al., The unusual active site of Gal6/bleomycin hydrolase can act as a carboxypeptidase, aminopeptidase, and peptide ligase. Cell(Cambridge,Mass.) (1998)

Release Date

1998-10-21

Peptides

GAL6: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

GAL6