- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 7 residues within 4Å:- Chain A: E.196, N.247, E.280, D.310, K.331
- Ligands: C2E.1, MN.3
5 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:E.196, A:E.280, A:D.310, H2O.1, C2E.1
MN.3: 5 residues within 4Å:- Chain A: D.310, D.311, E.367
- Ligands: C2E.1, MN.2
5 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:D.310, A:D.311, A:E.367, H2O.1, C2E.1
MN.6: 6 residues within 4Å:- Chain B: E.196, N.247, E.280, D.310
- Ligands: C2E.5, MN.7
5 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: B:E.196, B:E.280, B:D.310, H2O.3, C2E.5
MN.7: 5 residues within 4Å:- Chain B: D.310, D.311, E.367
- Ligands: C2E.5, MN.6
5 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: B:D.310, B:D.311, B:E.367, H2O.3, C2E.5
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.4: 15 residues within 4Å:- Chain A: Y.15, L.31, R.34, A.35, K.38, N.39, F.55, Q.57, L.69, E.72, I.73, D.76, R.78, H.79, M.100
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:L.31, A:F.55
- Hydrogen bonds: A:K.38, A:N.39, A:N.39, A:Q.57, A:D.76, A:D.76, A:R.78
- Water bridges: A:R.78
- Salt bridges: A:R.34, A:K.38
FMN.8: 15 residues within 4Å:- Chain B: Y.15, L.31, A.35, K.38, N.39, F.55, Q.57, L.59, L.69, E.72, I.73, D.76, R.78, H.79, M.100
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:L.31, B:F.55
- Hydrogen bonds: B:K.38, B:N.39, B:N.39, B:Q.57, B:D.76, B:D.76, B:R.78
- Water bridges: B:R.78
- Salt bridges: B:K.38
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barends, T.R. et al., Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase. Nature (2009)
- Release Date
- 2009-06-23
- Peptides
- Klebsiella pneumoniae BlrP1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barends, T.R. et al., Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase. Nature (2009)
- Release Date
- 2009-06-23
- Peptides
- Klebsiella pneumoniae BlrP1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B