SMTL ID : 3gg9.1 (1 other biounit)

CRYSTAL STRUCTURE OF putative D-3-phosphoglycerate dehydrogenase oxidoreductase from Ralstonia solanacearum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: R.56, G.79, R.80, G.106, S.107, R.224, Y.303, Y.312 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.80, A:S.107, A:Y.312, A:Y.312 Water bridges: A:R.224, A:R.224 Salt bridges: A:R.56, A:R.224 SO4.2: 5 residues within 4Å: Chain A: G.169, K.170, I.171, R.224 Ligands: GOL.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.170, A:I.171 Water bridges: A:G.172, A:R.224 Salt bridges: A:R.224 SO4.3: 2 residues within 4Å: Chain A: R.306 Chain B: Q.161 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.161 Water bridges: B:R.156, B:D.217, B:D.217, B:K.242, B:K.242, B:T.244, A:R.306 Salt bridges: A:R.306 SO4.7: 7 residues within 4Å: Chain B: R.56, G.79, R.80, G.106, R.224, Y.303, Y.312 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.80, B:S.107, B:Y.312 Water bridges: B:R.224, B:R.224 Salt bridges: B:R.56, B:R.80, B:R.224 SO4.8: 5 residues within 4Å: Chain B: R.80, G.169, K.170, I.171, R.224 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.80, B:K.170, B:I.171 Water bridges: B:G.172 Salt bridges: B:R.224 SO4.9: 2 residues within 4Å: Chain B: A.236, R.240 2 PLIP interactions: 2 interactions with chain B Water bridges: B:T.234 Salt bridges: B:R.240 SO4.10: 2 residues within 4Å: Chain B: A.181, G.183 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.178

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: A.253, I.275, V.277, F.278, E.279, H.287, L.289 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.279, A:H.287 Water bridges: A:M.261, A:E.279 GOL.5: 8 residues within 4Å: Chain A: I.171, H.222, L.223, R.224, S.251, R.252, Y.303 Ligands: SO4.2 7 PLIP interactions: 7 interactions with chain A Water bridges: A:I.171, A:H.222, A:R.224, A:R.224, A:L.225, A:T.250, A:S.251 GOL.6: 2 residues within 4Å: Chain A: R.16, F.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.16 GOL.12: 6 residues within 4Å: Chain B: N.249, A.253, V.256, I.275, V.277, L.289 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.249, B:E.279 GOL.13: 3 residues within 4Å: Chain B: R.191, E.192, N.193 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.192, B:N.193 Water bridges: B:R.191

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 2 residues within 4Å: Chain B: R.56, R.58 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Putative D-3-Phosphoglycerate Dehydrogenase from Ralstonia Solanacearum. To be Published

Release Date

2009-03-24

Peptides

d-3-phosphoglycerate dehydrogenase oxidoreductase protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

d-3-phosphoglycerate dehydrogenase oxidoreductase protein

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