SMTL ID : 3gge.2 (1 other biounit)

Crystal structure of the PDZ domain of PDZ domain-containing protein GIPC2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain B: E.59, W.64, K.72 Chain C: S.1, M.2, K.3 Chain E: K.71 5 PLIP interactions: 1 interactions with chain E, 2 interactions with chain B, 2 interactions with chain C Salt bridges: E:K.71, B:K.72, C:K.3 Hydrogen bonds: B:E.59, C:M.2 SO4.2: 3 residues within 4Å: Chain B: H.52, P.89, K.90 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.90 Salt bridges: B:H.52 SO4.4: 7 residues within 4Å: Chain B: K.71 Chain E: E.59, W.64, K.72 Chain F: S.1, M.2, K.3 5 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B, 2 interactions with chain E Hydrogen bonds: F:M.2, E:E.59 Salt bridges: F:K.3, B:K.71, E:K.72 SO4.5: 3 residues within 4Å: Chain E: H.52, P.89, K.90 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:K.90 Salt bridges: E:H.52 Water bridges: D:T.23

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain B: N.60, V.62, W.64 Chain C: S.1, K.3, G.4, I.87 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.1, C:G.4, B:N.60 GOL.6: 7 residues within 4Å: Chain E: N.60, V.62, W.64 Chain F: S.1, K.3, G.4, I.87 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:N.60, F:S.1, F:G.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of the PDZ domain of PDZ domain-containing protein GIPC2. To be Published

Release Date

2009-03-24

Peptides

PDZ domain-containing protein GIPC2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

PDZ domain-containing protein GIPC2

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